Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02031 ATGGTGCACCACAATGCTATGGATTTGGAGGACAGTGTTGTGGAATCTGAGGAGTGTGTTGTTGTTGTGAATGGAAAAATTCTTGTATTTGATATTTCTTCAATGTCTCAACAAAGGCAAGCTCAGATGGTGGGTGGAAACAACCAGGAGCAATATAATGACACAACTTTTACCAAAATCTTTGTTGGAGGGTTGGCTTGGGAGACTCAGAGGGACACAATGAAAAGATATTTTGAGCAGTTTGGAGAGATCTTGGAGGCTGTTGTGATCACAGATAAGAACACTGGGAGATCCAAGGGTTATGGCTTTGTCACATTTAAGGATCCTGAGGCAGCCATGAGAGCATGTCAGAACCCATCTCCAGTTATTGATGGGAGGAGGGCTAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAACCGGCCACCAACTTTTCAGCATGGTGCAGGAAGGTTCAGGCCACCACCTGGACTAGTGACATCACCTGCTTATCATGGTTCTTCATCTTCTACTACATTTTTCCATCAACCCCCTAGGCAATACACATTTCCTTATTCAGCATACGGATATTCTGGATATTCACAAGACACCTTGTATCCTACGAACTATTATAATGTGTATGGAGTTCAGCAATTTTCAGCTTACTACCCATCTGCTGGAGCTTCTGGTGCAGTAGGGTTGATCCATAATATCTACCCCTTTTATGGTCAATATGCACAGAGTATCCAGGCTCATGGTTTTGGGGTTCAATACCCTCAAATGGCACAGTTTCCATTTTTGCCTCAGCATTATGGCTCCACTGGGATATTGTCATATCCTTCTTCTGTAGCAGTGCCAACAACTAGTGCAGGAACTGCAACCACAACTACAACACCAACAACATCATCAGGTGTGACAGCAACAGTGGCTGGTAGTTCACAAGCCTCACAAGCAGCTTCTGAACAAAATTCTACATCTACAAAGATACAGAACACGGAAGGCTAA 984 0.437 MVHHNAMDLEDSVVESEECVVVVNGKILVFDISSMSQQRQAQMVGGNNQEQYNDTTFTKIFVGGLAWETQRDTMKRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGANKNRPPTFQHGAGRFRPPPGLVTSPAYHGSSSSTTFFHQPPRQYTFPYSAYGYSGYSQDTLYPTNYYNVYGVQQFSAYYPSAGASGAVGLIHNIYPFYGQYAQSIQAHGFGVQYPQMAQFPFLPQHYGSTGILSYPSSVAVPTTSAGTATTTTTPTTSSGVTATVAGSSQASQAASEQNSTSTKIQNTEG 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02031 327 SMART rrm1_1 59 131 IPR000504 GO:0003723
Spst4g02031 327 PANTHER BOULE-RELATED 38 321 - -
Spst4g02031 327 CDD RRM_RBM24_RBM38_like 58 133 - -
Spst4g02031 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 135 IPR000504 GO:0003723
Spst4g02031 327 FunFam RNA-binding protein 24-B isoform X1 45 151 - -
Spst4g02031 327 Gene3D - 31 150 IPR012677 -
Spst4g02031 327 MobiDBLite consensus disorder prediction 281 327 - -
Spst4g02031 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 117 IPR000504 GO:0003723
Spst4g02031 327 SUPERFAMILY RNA-binding domain, RBD 43 156 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02031 Spst-Chr4 61088921 61091340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02031 54 134 C2H2 Transcription Factor Family AT2G19380 45.679 2.90e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02031 - - pvu:PHAVU_010G118600g 506.908