Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02030 ATGGGGAAGAAGGGAAGTGGTAGTTCATGGTTAACTGCTGTCAAAAGGGCTTTCAGATCTCCAACCAAAGACAGTGATAAAAGGAGTGGCAGAAGAAGAGAAGACTGTGATCAAGAAGAAGACGAAGAAAAGAAAAGGGAAAAAAGAAGATGGATTTTCAGGAAGACCCACATGAGTCATGAAGGAGTGAACAGCAACAGCACTCAACAAAAGTTGAAGCATGATGTGGCGGCAGCTAGTGGGGGTTCAAGGACAGACCAGGATCAGAAGCATGCACTTGCGGTGGCGGTGGCCACCGCAGAAGCCGCCATGGCCACCGCTCAGGCGGCGGTGGAGGTGGCAAGGTTGACCAAACCTGCTAGCCATGCAAAGGAGCATTATGCTGCTGTTGTGATCCAAACTGCTTTCAGAGGGTATCTGGCAAGAAGAGCACTTCGTGCACTAAAGGGGTTGGTGAAGTTGCAAGCTTTGGTTAGGGGTCACAATGTTAGGAAGCAGGCAAAGATGACTCTTAGATGCATGCAGGCTTTGGTTAGAGTTCAGGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCACTTGACGGTAGCAGAAAATCCACTTTCAGTGATACCGCCAGTGTTTGGGACTCGCGGTATCTTCAGGATATTTCAGATAGGAAATCAATATCAAGAGAGGGGAGCAGCATTGCAGATGACTGGGATGAACGTCCTCACACAGTTGAAGAAGTGAAGGCTATGTTGCAGCAGAGGAAGGAAGCTGCAATGAAGAGGGACAAGAACTTGTCCCAAGCCTTTTCCCATCAGATTTGGAGGAATGGCAGGACATCATCAATTGGAAATGAAGACGAGTTGGAAGAGAGACCAAAATGGCTAGATCGGTGGATGGCCACAAAGCCATGGGAGAATAGAGGAAGGGCTTCAACTGATCAAAGAGACCCCATTAAAACTGTGGAGATTGACACCTCTCAGCCTTATTCATATCTAGGGACCAATTACAGAAGATCACATCCAAATTATCAATATAACCCAAACCACCATCAACCACAAAGGCATTCCATTGCTTCCCCACTCCATAGATCTCTCCAAAATGGATCCCTTCACCAATCCCCTGCAACCCCTTCTCCTGCCAAATCAAGGCCTATCCAAGTTCGGTCAGCGAGCCCCAGATGCGTTAGAGAAGACAGAAACTACCCCACCTCCCAAACACCAAGCTTGAGGTCCAACTACCACTATACTGGAAACTTGTACCAAAATGCAAGGGCTGTTGGAACCGGAACTAGTAGTGGTGGTGCTACATTGCCTAATTACATGGCGGCAACAGAGTCTGCAAAGGCTCGAATTCGGTCACAAAGCGCCCCGAGGCAGAGGCCATCCACACCAGAGAGGGACAGGGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCTGACCCTTATAGCGTTGGAGTGAGTTATGGAAATTACGGGCACAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGGATCACACTTTGGGTTGGAGCAGCAGTCAAACTACTCCTCTTGCTGCACTGAGAGTGTTGGTGGTGGTGAGGTTTCTCCTTCTTCAACTGGTGACCTTAGGAGGTGGTTGAGATGA 1623 0.4861 MGKKGSGSSWLTAVKRAFRSPTKDSDKRSGRRREDCDQEEDEEKKREKRRWIFRKTHMSHEGVNSNSTQQKLKHDVAAASGGSRTDQDQKHALAVAVATAEAAMATAQAAVEVARLTKPASHAKEHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWDSRYLQDISDRKSISREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKNLSQAFSHQIWRNGRTSSIGNEDELEERPKWLDRWMATKPWENRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPNHHQPQRHSIASPLHRSLQNGSLHQSPATPSPAKSRPIQVRSASPRCVREDRNYPTSQTPSLRSNYHYTGNLYQNARAVGTGTSSGGATLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYSVGVSYGNYGHSLRSPSFKSVSGSHFGLEQQSNYSSCCTESVGGGEVSPSSTGDLRRWLR 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02030 540 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Spst4g02030 540 MobiDBLite consensus disorder prediction 59 74 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 301 316 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 317 381 - -
Spst4g02030 540 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Spst4g02030 540 SMART iq_5 124 146 IPR000048 GO:0005515
Spst4g02030 540 SMART iq_5 147 168 IPR000048 GO:0005515
Spst4g02030 540 MobiDBLite consensus disorder prediction 1 88 - -
Spst4g02030 540 Pfam IQ calmodulin-binding motif 128 146 IPR000048 GO:0005515
Spst4g02030 540 Pfam IQ calmodulin-binding motif 152 168 IPR000048 GO:0005515
Spst4g02030 540 PANTHER IQ-DOMAIN 5-RELATED 1 476 - -
Spst4g02030 540 FunFam IQ-domain 11 124 175 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 301 408 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 19 57 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 500 528 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 443 477 - -
Spst4g02030 540 Pfam Protein of unknown function (DUF4005) 387 489 IPR025064 -
Spst4g02030 540 Gene3D - 122 184 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 394 408 - -
Spst4g02030 540 MobiDBLite consensus disorder prediction 500 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02030 Spst-Chr4 61081586 61083917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02030 10 540 IQD Protein Family AT4G00820 58.951 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02030 - - gmx:100786729 944.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02030 4 61081586 61083917 Spst4g02030 4 61081586 61083917 ECH