Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02027 ATGAGCGGGAAACCGGTGAGACCTTGTACACGTGTGGGAAAGTACGAGCTCGGCAAAACCATTGGCGAGGGAACCTTCGCAAAGGTCAAGTTCGCAAAGAACGTTGAGAATGGTAACTATGTAGCCATCAAAATCCTTGACCGTAACCACGTCCTCCGCCACAAGATGATGGAACAGCTGAAGAAAGAAATTTCAGCCATGAAGATGATTAATCATCCAAACGTTGTCAAAATTCATGAGGTGATGGCAAGCAAAACAAAGATTTACATTGTGCTAGAGTTGGTTAATGGAGGAGAACTATTTGACAAAATAGCTAAAAATGGGAGACTTAAAGAGGATGAAGCAAGGAGTTATTTCCACCAACTAATCAATGCAGTTGATTACTGCCATAGTAGAGGCGTGTACCACAGAGATTTGAAGCCAGAGAATCTTCTGCTGGACTCAAATGGCATTTTGAAAATTACAGATTTTGGATTGAGTACCTACGCACAGAAGGAGGATGAACTTCTCCGCACTGCTTGTGGAACTCCAAATTATGTTGCTCCTGAGGTGCTTAATGATAGAGGTTATGTTGGATCTACATCTGATATCTGGTCCTGCGGAGTCATTCTCTTTGTGCTTATGGCTGGTTACTTGCCCTTTGATGAGCCAAGTAATATGGCATTGTACAAAAAAATTGGCAAGGCTCAATTTACATGTCCATCATGGTTTTCCTCTGAGGCAAAGAAGCTACTGAAGCGTATTCTTGATCCAAACCCTTTAACAAGGATAAAAATTCCTGAAATCTTAGAAGATGAATGGTTCAGAAAAGGATACAAACCAGCTATTTTTACAGAGGAAGAGGATATCAATGTAGATGATGTTGCTGCTGCTTTCAATGATTCTAAGGAAAACTTTGTGACAGAGAGAAAAGAGAAACCAGTGTCAATGAATGCTTTTGAGCTCATATCTAGGCTAATGATGCTTTCTTCTTCATTTTGTTTAAACTCAATACAGAATGGGATTGTTAAGAGAGAAACACATTTTACGTCACAGCGTCCTGCAAATGAAATCATGTCAAAAATTGAGGAAGCTGCCAAGCCTCTGGGATTTAATGTTCACAAGCGAAATTACAAGATGAAGCTGCAAGGTGATAAGAGCGGAAGGAAGGGTCACCTTTCAGTGGCTACAGAGGTTTTTGAAGTGGCTCCCTCCTTGCACATGGTGGAGCTTCGAAAGACTGGGGGTGACACACTAGAGTTTCATAAGGCATTTCTACAAAAACTTTTCATCAGGGTTACAAGATGTAGTGTGGCATTCTGA 1302 0.4109 MSGKPVRPCTRVGKYELGKTIGEGTFAKVKFAKNVENGNYVAIKILDRNHVLRHKMMEQLKKEISAMKMINHPNVVKIHEVMASKTKIYIVLELVNGGELFDKIAKNGRLKEDEARSYFHQLINAVDYCHSRGVYHRDLKPENLLLDSNGILKITDFGLSTYAQKEDELLRTACGTPNYVAPEVLNDRGYVGSTSDIWSCGVILFVLMAGYLPFDEPSNMALYKKIGKAQFTCPSWFSSEAKKLLKRILDPNPLTRIKIPEILEDEWFRKGYKPAIFTEEEDINVDDVAAAFNDSKENFVTERKEKPVSMNAFELISRLMMLSSSFCLNSIQNGIVKRETHFTSQRPANEIMSKIEEAAKPLGFNVHKRNYKMKLQGDKSGRKGHLSVATEVFEVAPSLHMVELRKTGGDTLEFHKAFLQKLFIRVTRCSVAF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02027 433 FunFam Non-specific serine/threonine protein kinase 8 308 - -
Spst4g02027 433 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02027 433 FunFam Non-specific serine/threonine protein kinase 304 428 - -
Spst4g02027 433 SUPERFAMILY Protein kinase-like (PK-like) 12 321 IPR011009 -
Spst4g02027 433 Pfam NAF domain 307 368 IPR004041 GO:0007165
Spst4g02027 433 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Spst4g02027 433 Gene3D Transferase(Phosphotransferase) domain 1 95 296 - -
Spst4g02027 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Spst4g02027 433 Gene3D Kinase associated domain 1, KA1 304 426 - -
Spst4g02027 433 ProSiteProfiles Protein kinase domain profile. 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g02027 433 Gene3D Phosphorylase Kinase; domain 1 7 94 - -
Spst4g02027 433 CDD CIPK_C 311 422 - -
Spst4g02027 433 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 416 - -
Spst4g02027 433 FunFam Non-specific serine/threonine protein kinase 7 94 - -
Spst4g02027 433 SMART serkin_6 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02027 Spst-Chr4 61034539 61039692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02027 10 416 CBL-interacting serine-threonine protein kinases AT1G01140 73.608 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Spst4g02027 Pkinase 3.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02027 - - gmx:100794136 767.303