Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02019 ATGGAGGAACTAATCATCTCTCCTTCCTCATCCTCCTCTCTCGTCTCTCTACCCCAAGAGAACCCAACCCCAACACCATCCCTTCAACAAAAACTTCAATTTCTCCTCCAAAGCCAACCGGATTGGTGGGTCTACGCCATTTTCTGGCAGGCCTCACACGACGACAATGGCAACCTTTACCTATCCTTCGGAGAAGGCCATTTCCAAGGCACCAAAGAAACTTCCCCAAAATTCCCAACCCCCATTTCCACTAAAAAGTTCACCAAATCCCCCACAACAGAAAACATCAACGACGCCGAGTGGTTCTACGTCATGTCGTTGACTCGCACTTTTGCCATCAACAATGCTTCTTCTTATTCTTCTTCTTCTTCTTCATCATCATCTTCTACAACTTCACTCCTTGGCAAGTCTTTTGCTTTGGGCTCCGTGTTGTGGCTCAATAGCAAGCACGAACTCCAATTCTACAACTGCGACAGAACCAACGAGGCCCACGAGCACGGGATCGAAACGTTGATCTCCATCCCCACACAAAACGGCGTCGTGGAAATGGGATCCTACGACACCATCAAGCAAAACTGGAACCTCGTCCAACATGTCAAATCTCTATTCCAACCCCTTCCAGATCCGCTTCCCGTTCAAGTCCACGACGACCACACCATCTCCTTCGCCAACATCGGCATCGTCGCCGGAATCCAAGAAACCAAAAAGCGTAAACAAACCCAAACAACGCTCAACAACAAAAACGACAACTACGTCGACTCCGAACACTCTGATTCGGATTGTCCAACCTTGCCAACCACAATAACCCCGACAACCTTGGAGCCCAAAAAACGAGGCAGAAAGCCTGGTCTCGGACGCGAGACGCCAATGAACCACGTCGAGGCTGAGCGACAACGGAGGGAGAAGCTGAACCACCGCTTCTACGCGCTACGTGCGGTGGTTCCCAACGTTTCGAGGATGGACAAGGCATCGTTGTTGTCCGATGCTGTCGCTTACATCAACGAGCTCAAAGCGAAGATTGAGTACTTGGAATCGCAGCAACAAAGAGAGGGTAGTAAAAAAATCAAGACAGAAATGACGGATACCATGGATAACCAGAGCACCGCCACCACCTCCACCATCGTAGACCAGAGCAGGCCTGGGCCTGGAGGCCCAGGCTCATTTGGTCTCGAGATCGATGTGAAGATCGTGGGGCCCGATGCCATGGTGAGGGTGCAATCTGAAAATGTTAACCACCCCGGGGCGAGGCTAATGGGTGCATTGAGAGACCTAGAGTTTCAGGTTCATCACGCTAGCATGTCGTGCGTTAACGATCTTATGCTACAGGACGTGGTGATTAATGTTCCTAAAGGAAAGAGGAGCCAAGAGGGTCTCAAATCGGCGATTCTCCTGAGGTTGGATCAGTGA 1407 0.5053 MEELIISPSSSSSLVSLPQENPTPTPSLQQKLQFLLQSQPDWWVYAIFWQASHDDNGNLYLSFGEGHFQGTKETSPKFPTPISTKKFTKSPTTENINDAEWFYVMSLTRTFAINNASSYSSSSSSSSSSTTSLLGKSFALGSVLWLNSKHELQFYNCDRTNEAHEHGIETLISIPTQNGVVEMGSYDTIKQNWNLVQHVKSLFQPLPDPLPVQVHDDHTISFANIGIVAGIQETKKRKQTQTTLNNKNDNYVDSEHSDSDCPTLPTTITPTTLEPKKRGRKPGLGRETPMNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIEYLESQQQREGSKKIKTEMTDTMDNQSTATTSTIVDQSRPGPGGPGSFGLEIDVKIVGPDAMVRVQSENVNHPGARLMGALRDLEFQVHHASMSCVNDLMLQDVVINVPKGKRSQEGLKSAILLRLDQ 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02019 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 279 348 IPR036638 GO:0046983
Spst4g02019 468 PANTHER MYC 14 464 IPR045084 GO:0003700|GO:0006355
Spst4g02019 468 MobiDBLite consensus disorder prediction 1 27 - -
Spst4g02019 468 MobiDBLite consensus disorder prediction 361 378 - -
Spst4g02019 468 MobiDBLite consensus disorder prediction 257 273 - -
Spst4g02019 468 MobiDBLite consensus disorder prediction 361 388 - -
Spst4g02019 468 MobiDBLite consensus disorder prediction 73 91 - -
Spst4g02019 468 Pfam Helix-loop-helix DNA-binding domain 291 336 IPR011598 GO:0046983
Spst4g02019 468 Gene3D - 285 351 IPR036638 GO:0046983
Spst4g02019 468 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 203 IPR025610 -
Spst4g02019 468 SMART finulus 293 342 IPR011598 GO:0046983
Spst4g02019 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 287 336 IPR011598 GO:0046983
Spst4g02019 468 MobiDBLite consensus disorder prediction 274 299 - -
Spst4g02019 468 CDD bHLH_AtAIB_like 285 361 - -
Spst4g02019 468 MobiDBLite consensus disorder prediction 239 299 - -
Spst4g02019 468 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02019 Spst-Chr4 60909815 60911221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02019 24 466 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 37.582 5.24e-75 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g02019 bHLH-MYC_N 2.6e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02019 - K13422 var:108347008 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02019 4 60909815 60911221 Spst4g02019 4 60909815 60911221 ECH