Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02013 ATGGAATATACTTATTCAGCAGAGGCTGCAGAGGCAGAAACTTACACCAGTAGCAGCACCACCCCATCATGTGCCATGAGATCAAAGAAGAAAAACAACAACACAAGAAGGTTCAGTGATGATCAAATCAAATCATTGGAAACCATGTTTGAGACAGAGTCAAGGCTTGAGCCTAGAAAGAAGTTGCAGTTGGCAAGAGAGCTTGGATTGCAGCCAAGACAGGTTGCTATATGGTTTCAGAACAAGAGAGCTAGGTGGAAGTCAAAGCAACTAGAGAGAGACTATGGTATACTCCAATCCAATTACAACAGTTTGGCCTCACGTTTTGAAGCTCTTAAGAAGGAAAAACAAACATTACTAATTCAGCTGCAGAAGCTGAATCATCTAATGCAGAAGCCGTTGGAGCCAGGTCAGAGTCTCATACAAGTTGAAGCAGCAAACAGCATGGACAGTGAATCAGAAAATGGAGGCACCATGAAATGTGAGCATGAGGGAAAGCCAAGCCCATCAATGGAAAGATCAGAACATGTACATGGTGTTCTGTCTGATGATGACGCTAGCATAAAGGTGGAAAATTTTGGCCTAGAAGATGAACATGATCTCTTGAACTTTGTTGAGCATGCTGATGGCTCCATGACTTCACCGGAAGATTGGAGTGCTTTCGAATCCAATGATCTCTTAGGCCAAACAACCAGTGATTACCAATGGTGGGATTTCTGGTCCTGA 726 0.4325 MEYTYSAEAAEAETYTSSSTTPSCAMRSKKKNNNTRRFSDDQIKSLETMFETESRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNSLASRFEALKKEKQTLLIQLQKLNHLMQKPLEPGQSLIQVEAANSMDSESENGGTMKCEHEGKPSPSMERSEHVHGVLSDDDASIKVENFGLEDEHDLLNFVEHADGSMTSPEDWSAFESNDLLGQTTSDYQWWDFWS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02013 241 Pfam Homeobox associated leucine zipper 89 131 IPR003106 GO:0006355|GO:0043565
Spst4g02013 241 Coils Coil 109 129 - -
Spst4g02013 241 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 170 IPR045224 GO:0003700
Spst4g02013 241 Gene3D - 18 98 - -
Spst4g02013 241 SUPERFAMILY Homeodomain-like 16 91 IPR009057 -
Spst4g02013 241 SMART HOX_1 30 93 IPR001356 GO:0003677
Spst4g02013 241 MobiDBLite consensus disorder prediction 1 39 - -
Spst4g02013 241 CDD homeodomain 36 90 IPR001356 GO:0003677
Spst4g02013 241 MobiDBLite consensus disorder prediction 10 29 - -
Spst4g02013 241 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Spst4g02013 241 Pfam Homeodomain 36 87 IPR001356 GO:0003677
Spst4g02013 241 PRINTS Lambda-repressor HTH signature 60 69 IPR000047 GO:0003677
Spst4g02013 241 PRINTS Lambda-repressor HTH signature 69 85 IPR000047 GO:0003677
Spst4g02013 241 FunFam Homeobox-leucine zipper protein ATHB-7 16 89 - -
Spst4g02013 241 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Spst4g02013 241 MobiDBLite consensus disorder prediction 156 173 - -
Spst4g02013 241 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02013 Spst-Chr4 60786948 60787928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02013 19 241 Homeobox Transcription Factor Family AT2G46680 49.798 3.43e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g02013 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02013 K09338 - gmx:100797862 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02013 4 60786948 60787928 Spst4g02013 4 60786948 60787928 ECH