Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g02000 ATGCCAGCAGAGATGCGATACCAACTCACATCAATGAAATTCTGGGGCTACGAGAGTGGTCAAACAAAGCCAGGCAAGCTTGGAATGGGATGGAAAAGTCTTGTAGACTTATTATACAAGGGAGAGAGGTATTTGTTGACTTTGACTCTTCCCTTGTTGCTTGTTCAAGAAATCAGAGCATACATGTCAATGGGGTCACGCCACTTTTTTAGCTTTCTTGACCTCTCATTTACCTTGAGCTTTTGGTGTAAGATAGTTAGTTCACTTGCAGAAGTACATGGAAGAGAAGAGGTGTCAATTAGTCAAGTCAACTGTGCCCCTCTTGGACTCATCAAAGCAATTTTAGCTTCTCGATTCATCTCAATTTTCTCCTTTTTCCTTCCTTACAACAAGTTGGACAAGATGCCAGGTCCAGAATCTGTTGCTTGTGGTGAAGAAAATAAAATGAGAAATGTGTCAATATATGTTCAAAGTTTGAAGTTTTGGGAAATTTCTGCTTCTCTTCTGCCACCATTAGTGATCGTGTTATGGCTTCATGGGAAGGAAAAGGGTCGTATTTCCTTGCCTAAGTTGTGTTGCATGATGATGGTGTTAGATCTGTTATCTTCTGGTCCTACTGGAACTGCCATTTCTCAAACTATAGAGACCATTTCTGAGTTCCTAGTTACTGCTAATGATGTTCTTGTGAAGAAGGATAGTTTTAAAGAACTTGGAGCTTACATGGAAAGAATTAAGCCTGTCTTAGAAGAGTTGAGGAAAGGAAAAGTCAGTGATTCTGAGACACTAAACCGAGCCATTGAGACGATGAATAAAGAAATTAAAGATGCAAAGCTACTAGCTCTAGAGTGCAGCAAGAAGAGCAGGTTTTATCTACTAATGAACTGCAGGTCCATTGTTAACAAGTTAGAAAATCACACAAAACATCTGAGTTCTGCACTTGGTCTTCTTCCTTTAGCCACAACAGATCTTTCTTCAGGAATAGTTGAAGAAATTGAAAAGCTATGTGAAAACATGCAGACATGTAGATTTAAGGCGGCTCTAGATGAAGAAGAGATCTTGGAGAAAATTGACTCAGGGATTAGGGAAAACAATGTTGATCGTTCCTATGCAAATAAGTTGATTTTTCTCATTTCTGAGGCTGTTGGGATTAGTAATGAGAGGTCAGCAATAAAGTTGGAACTTGAGGAGTTCAAGAGTGAAATTGAAAAAGCGCGAGATAGGAAGGAGTTAGCTGAAGCTATGCAAATGGATCAAATCATTGCTTTGTTGGAAAGGGCTGATGCAGCTTCATCACCTAGGGACAAGGAAAACAAATACTTTGCGAAACGCCAATCTTTGGGCAGTCAAATCTTGGAGCCTTTGCAGTCATTTTTTTGCCCCATCACCCAGGATGTTATGGTGGATCCTGTAGAAATTTCATCTGGGCAGACATTTGAGAGAAGTGCCATAGAAAAGTGGTTTGCAGATGGAAACAAATCGTGCCCCTTGACATGGATTCCTCTAGACACATCAATTTTGAGACCTAACAAAAAGTTGAAACAATCCATACAAGAGTGGCATGATAGAAATATAATGATTAGAATTGCTACATTGAAAGAAAAAATCCTGTCTGGAAATGATGAGGAAGTGCTGCGTGATCTGCAAATTCTTCAGAATTTGTGTGAAGAAAAAGACCAACACAGGGAATGGGTTATTCTGGAGAATTATATCCCAACTCTCATCCAAATTCTATCAAAAAAACGTGATATAACGAAACATTCTCTTGTCATCCTTGGCATGCTGGCAAAAGATAATGAAGAAGCTAAGAGAAAAATTTCAACCACTGATCGTGCAATTGAATCGATTGTCAAGTCTCTTGGACGTCGTGCAGAGGAAAGGAAGTTAGCAGTGTCTTTACTACTTGAATTATCCAAATATGATATGGCACGAGAACACATTGGAAAAGTTCAAGGTTGCATACTACTGTTGGTGACTATGTCTAGTGGAGATGACAACCAAGCTGCTAGAGATGCAACGGAGCTATTGGAGAAGCTTTCATACTCTGATCAGAATGTTATACAGATGGCAAAAGCAAATTATTTCAAGCATTTATTGCAGCGTCTCTCCGCAGGACCAGAAGATATAAAGATGATCATGGCGACAACTTTAGCAGAAATGGAGTTAACTGACCATAATAGAGAGTCCTTGTTTGACGGTGGTGTACTGGTTCCTCTTCTTCACATGTTCTCACATAATGATCTTCGGGTGAAAACAGTTGCTATTAAAGCTCTTAGGAATTTATCCAATTCAAAGAAAAATGGACAGGAAATGATAAGACAGGGGGCCGCACGACCACTACTTAACCTCCTTTTCAATCAAAGCATATACACTGCATGTTTGTGGGAAGATATAGCAACCATAATCGTGCAACTTGCTGCATCAACTATCTCTCAGGACGCTCAAACACCTGTTTTATTACTAGATTCTGATGATGATGTTTGCAATCTCTTCAGTTTAGTTAGTGTCTCAGAGCCTGTTGTGCAACAGAACATTATACAGACCTTTTATGCCTTGTGTCAAACACCCTCGGCTTCATATATCAGAACCAAATTGAAAGAGTACTCAGCTGTTCCGAAACTGGTTCAACTGTGTGAGAATGAAAACCAAAACCTGCGAGCAAGTGCTGTGAAGTTGCTTTCTTGCTTGGTGGCGAGTTGTGACGAAGCCATAATACAGGAGAACGTGAATCAGAAATGCATCAATACTCTACTCCGGATCATAAAATCTTCATCCGATAAAGAGGAAATACTTTCTGCCATGGGAATTATATGCTATCTTCCAGAAATGGACCAGATAACTGAATGGCTTCTGGATGCTGGGGCACTGCCAATCATTACAAGTTATGTCCAAAATAGGAGAGACAGGGATCATCTAAGGAATAATTTAGTAGAGAATGCCATTGGTGCCCTTTGTCGTTTTACAGTTCCAAAAAACTTGGAGTGGCAAAAAAGTGCAGCTGAAACTGGGATCATAACTGATTTGGTGCAATTGCTTGAAAATGGAACCCCCTTGACAAAACAACGTGCGGCGCAGTCTCTTACTCAATTCTCTAATAGCTCGTTTAGGCTGAGCAGGCCGATACCGAGGCGCAAAGGACTATGGTGCTTCTCAGCCCCTGCTGATATTGGCTGCATGGTTCATGGAGGAATATGCTCAGTCAAATCGTCATTTTGCCTTTTGGAGGCTAATGCAGTGGGACCACTCACAAAAACTCTTGGGGACTCGGATCCTGGAGTTTGTGAGGCTTCTTTGGATGCTCTATTAACATTAATAGAAGGTGAAAGACTGCAGAGTGGTAGTAAAGTGCTTGCAGAAGCAAATGCCATACCACATATAATCAGATATCTTGGTTCCCACTCCCCTGGCTTGCTGGAGAAGTCTCTAAATGCTTTGGAAAGGATTTTTCGGCTAGTCGAATTCAAACAGATGTATGGACCCTCAGCTCAAATGCCTCTAGTTGATTTGACTCAGAGGGGTAATGGTAGGGTTAGATCCATGTCAGCTAGAATATTGGCACATTTGAACGTGCTTCATGATCAGTCTTCATATTTCTAA 3594 0.4068 MPAEMRYQLTSMKFWGYESGQTKPGKLGMGWKSLVDLLYKGERYLLTLTLPLLLVQEIRAYMSMGSRHFFSFLDLSFTLSFWCKIVSSLAEVHGREEVSISQVNCAPLGLIKAILASRFISIFSFFLPYNKLDKMPGPESVACGEENKMRNVSIYVQSLKFWEISASLLPPLVIVLWLHGKEKGRISLPKLCCMMMVLDLLSSGPTGTAISQTIETISEFLVTANDVLVKKDSFKELGAYMERIKPVLEELRKGKVSDSETLNRAIETMNKEIKDAKLLALECSKKSRFYLLMNCRSIVNKLENHTKHLSSALGLLPLATTDLSSGIVEEIEKLCENMQTCRFKAALDEEEILEKIDSGIRENNVDRSYANKLIFLISEAVGISNERSAIKLELEEFKSEIEKARDRKELAEAMQMDQIIALLERADAASSPRDKENKYFAKRQSLGSQILEPLQSFFCPITQDVMVDPVEISSGQTFERSAIEKWFADGNKSCPLTWIPLDTSILRPNKKLKQSIQEWHDRNIMIRIATLKEKILSGNDEEVLRDLQILQNLCEEKDQHREWVILENYIPTLIQILSKKRDITKHSLVILGMLAKDNEEAKRKISTTDRAIESIVKSLGRRAEERKLAVSLLLELSKYDMAREHIGKVQGCILLLVTMSSGDDNQAARDATELLEKLSYSDQNVIQMAKANYFKHLLQRLSAGPEDIKMIMATTLAEMELTDHNRESLFDGGVLVPLLHMFSHNDLRVKTVAIKALRNLSNSKKNGQEMIRQGAARPLLNLLFNQSIYTACLWEDIATIIVQLAASTISQDAQTPVLLLDSDDDVCNLFSLVSVSEPVVQQNIIQTFYALCQTPSASYIRTKLKEYSAVPKLVQLCENENQNLRASAVKLLSCLVASCDEAIIQENVNQKCINTLLRIIKSSSDKEEILSAMGIICYLPEMDQITEWLLDAGALPIITSYVQNRRDRDHLRNNLVENAIGALCRFTVPKNLEWQKSAAETGIITDLVQLLENGTPLTKQRAAQSLTQFSNSSFRLSRPIPRRKGLWCFSAPADIGCMVHGGICSVKSSFCLLEANAVGPLTKTLGDSDPGVCEASLDALLTLIEGERLQSGSKVLAEANAIPHIIRYLGSHSPGLLEKSLNALERIFRLVEFKQMYGPSAQMPLVDLTQRGNGRVRSMSARILAHLNVLHDQSSYF 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g02000 1197 Coils Coil 259 279 - -
Spst4g02000 1197 SMART Ubox_2 456 519 IPR003613 GO:0004842|GO:0016567
Spst4g02000 1197 CDD RING-Ubox_PUB 457 506 IPR045210 -
Spst4g02000 1197 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 208 1197 - -
Spst4g02000 1197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 528 IPR013083 -
Spst4g02000 1197 Gene3D - 208 321 IPR036537 GO:0007166
Spst4g02000 1197 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 733 775 IPR000225 GO:0005515
Spst4g02000 1197 CDD MLKL_NTD 214 339 - -
Spst4g02000 1197 SUPERFAMILY ARM repeat 528 1187 IPR016024 -
Spst4g02000 1197 SMART arm_5 1065 1105 IPR000225 GO:0005515
Spst4g02000 1197 SMART arm_5 1109 1149 IPR000225 GO:0005515
Spst4g02000 1197 SMART arm_5 857 897 IPR000225 GO:0005515
Spst4g02000 1197 SMART arm_5 722 762 IPR000225 GO:0005515
Spst4g02000 1197 SMART arm_5 941 988 IPR000225 GO:0005515
Spst4g02000 1197 SMART arm_5 557 596 IPR000225 GO:0005515
Spst4g02000 1197 SMART arm_5 763 814 IPR000225 GO:0005515
Spst4g02000 1197 SMART arm_5 899 938 IPR000225 GO:0005515
Spst4g02000 1197 SUPERFAMILY RING/U-box 443 523 - -
Spst4g02000 1197 Coils Coil 387 414 - -
Spst4g02000 1197 Gene3D - 818 1040 IPR011989 -
Spst4g02000 1197 ProSiteProfiles U-box domain profile. 452 526 IPR003613 GO:0004842|GO:0016567
Spst4g02000 1197 Gene3D - 529 807 IPR011989 -
Spst4g02000 1197 Gene3D - 1063 1195 IPR011989 -
Spst4g02000 1197 Pfam U-box domain 457 522 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g02000 Spst-Chr4 60675725 60684119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g02000 455 1197 U-box Gene Family AT1G20780 28.883 4.75e-63 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g02000 - - gmx:100799969 1650.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g02000 4 60675725 60684119 Spst4g02000 4 60675725 60684119 ECH