Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01998 ATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCTGTTGAACAGTGTTTGAAAGAGTATGGAGTGAAACTGGACAAGGGGCTGAGTACTCATGATGTTCAGAAGCGGCGCGACAAGTATGGCTGGAATGAGCTAGCAAAGGAGAAAGGGAAGCCCTTGTGGCAACTAGTGTTGGAACAATTTGATGACATGCTGGTGAAGATACTTTTGGCTGCAGCCTTCATATCATTTCTTTTGGCTTACTTTCACGGAAGTGACTCTGGGGAGTCTGGATTTGAGGCGTATGTCGAGCCACTTGTAATAATTTTGATTTTGGTCCTTAATGCCATTGTTGGAGTTTGGCAAGAGAACAACGCTGAGAAGGCACTTGAAGCCCTCAAAGAATTGCAATGTGAGTCTGGGAAAGTGTTAAGGGATGGCTATTTTGTGCCTGATTTGCCTGCTAGAGAGCTTGTTCCTGGTGATATTGTGGAGTTGCAGGTTGGAGATAAGGTCCCTGCTGATATGAGAGTTGCAGCTTTGAAAACCTCAACATTGAGGGTTGAGCAAAGTTCTTTAACTGGTGAAGCAATGCCAGTTCTCAAGGGAACAAATCCTATTTTCTTGGAAGACTGTGAGTTGCAGGCTAAAGAAAACATGGTATTTGCAGGCACCACTGTTGTCAATGGAAGTTGTGTATGTATTGTTATCACCACAGGGATGGAAACTGAAATTGGAAAGATACAGAAGCAGATACATGAGGCTTCTCAAGAGGACAGTGACACCCCTTTGAAGAAGAAGCTGGATGAGTTCGGTAACAGGCTTACCACTGCAATTGGTCTAGTTTGTCTCATTGTTTGGGTTATCAATTACAAGAATTTCATTTCTTGGGATGTTGTCGATGGATGGCCCTCAAACATAAAATTTTCATTCCAAAAGTGTACCTACTATTTCAAAATTGCTGTTGCTCTTGCAGTTGCTGCAATCCCTGAAGGTCTTCCTGCTGTTATCACAACTTGTTTAGCACTCGGTACACGGAAAATGGCTCAAAAGAATGCAATTGTGAGAAAGCTTCCTAGTGTGGAAACTCTGGGATGTACTACTGTGATATGTTCAGACAAAACTGGCACTTTGACGACAAATCAGATGGCTGTGACACAGTTCTTTACTTTGGGAGGGAAAACCACTGCTTCTAGACTCATTAGTGTTGAAGGCACAACTTATGATCCCAAAGATGGGGGAATTGTTGACTGGGGATGCTATAACATGGATGCTAATTTGCAAGTCATGGCTGAAATATGTGCTGTTTGTAATGATGCTGGGATTTACTTTGATGGTCGCCTTTTTAGAGCCACAGGTTTGCCTACTGAAGCTGCTCTCAAAGTGTTGGTTGAAAAGATGGGAGTTCCAGAAGTGAAGTCAAGGAGCAAAACTCGTGATAATGCACAACTTGCTGCAAACAACTTGATGGATGGAAACACTGTGGTGAATTTAGGATGTTGTGAGTGGTGGAATAAAAGATCTAAAAGGGTAGCTACATTGGAGTTTGATCGCATTCGGAAGTCAATGAGCGTTATTGTTCGTGAACCAAATGGTCAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGTTTACTTAAGCGTAGTTCACACGTGCAACTTGCTGATGGATCCTTGGTTCCAATAGATAACCAATGTAGGGAACTACTTCGTCAAAGACTCCAGGAGATGAGTTCAAAGGGATTGCGTTGCTTGGGTTTCTCATATAAAGATGAATTAGGAGAATTTTCAGACTATTATGCTGACACTCATCCTGCTCACAAGAAGTTGCTTGATCCAGCATACTATTCATCCATTGAAAGTGATCTAGTTTTTGTTGGCATTGTTGGCTTAAGAGATCCTCCTCGTGAGGAAGTTCACAAAGCAATTGAGGATTGTAAGGAAGCTGGCATTAGAGTTATGGTAATAACTGGAGACAATAAGTCCACAGCAGAGGCTATTTGTAGGGAAATCAATTTGTTCTCTAAAGATGAGGATCTCACAGGGCAAAGTTTGACCGGCAAGGAATTCATCACACTTGCTCATTCAGAACAAGTTGAAATATTGTTGAAACCAGGAGGCAAGGTTTTCTCTCGAGCTGAACCTAGACATAAGCAAGAAATCGTTAGACTGCTGAAGGAGATGGGGGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCTCCTGCACTTAAGCTAGCCGACATAGGGATTGCTATGGGCATAACTGGGACAGAGGTTGCAAAAGAAGCATCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATAGTTTCAGCTGTTGCTGAGGGTCGCTCTATTTATAATAACATGAAGTCATTTATAAGGTACATGATATCCTCCAATGTCGGGGAAGTAATATCCATATTCTTGACAGCTGCTTTGGGGATCCCAGAATGCATGATACCAGTGCAACTTCTGTGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAGAAGTGATGATGCATTAATAAGCCCTTGGGTTCTTTTCCGTTATCTGGTAATTGGTTCCTATGTGGGACTGGCAACAGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTTTTCTTGGCATCAATCTTGTGAGTGATGGTCACACAATTATAGAATTCTCCCAGCTTTGCAACTGGGGGGAGTGTCCATCATGGTCTAATTTCACTGTTGCTCCATTTGATGTTGGAGGGGGTCGCTTGGTCACCTTTTCAAATCCTTGTGACTATTTCTCAGTTGGCAAAGTAAAGGCCATGACTCTCTCTCTCTCAGTCTTGGTGGCAATTGAGATGTTTAACTCTTTGAATGCCCTCTCAGAAGATAATAGCTTGAGGAAACTACCACCTTGGAGGAACCCTTGGCTTTTGGTAGCCATGTCAATGTCATTAGGACTCCATTGCCTCATACTCTACACCCCCTTCCTTGCAGAAGTGTTTGGAGTTATTCCACTTAGTTTGAATGAGTGGTTTATGGTCCTTTTAATATCAGCACCTGTTATTCTCATTGATGAGATTCTGAAGTTAGCGGTGAGGAGTCAAAGGAGGTTGACAAAGGAGAAACAAGCATGA 3159 0.428 MEEKPFPAWSWSVEQCLKEYGVKLDKGLSTHDVQKRRDKYGWNELAKEKGKPLWQLVLEQFDDMLVKILLAAAFISFLLAYFHGSDSGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESGKVLRDGYFVPDLPARELVPGDIVELQVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTNPIFLEDCELQAKENMVFAGTTVVNGSCVCIVITTGMETEIGKIQKQIHEASQEDSDTPLKKKLDEFGNRLTTAIGLVCLIVWVINYKNFISWDVVDGWPSNIKFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTQFFTLGGKTTASRLISVEGTTYDPKDGGIVDWGCYNMDANLQVMAEICAVCNDAGIYFDGRLFRATGLPTEAALKVLVEKMGVPEVKSRSKTRDNAQLAANNLMDGNTVVNLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPNGQNRLLVKGAVESLLKRSSHVQLADGSLVPIDNQCRELLRQRLQEMSSKGLRCLGFSYKDELGEFSDYYADTHPAHKKLLDPAYYSSIESDLVFVGIVGLRDPPREEVHKAIEDCKEAGIRVMVITGDNKSTAEAICREINLFSKDEDLTGQSLTGKEFITLAHSEQVEILLKPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKSFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRRSDDALISPWVLFRYLVIGSYVGLATVGIFVLWYTQASFLGINLVSDGHTIIEFSQLCNWGECPSWSNFTVAPFDVGGGRLVTFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLRKLPPWRNPWLLVAMSMSLGLHCLILYTPFLAEVFGVIPLSLNEWFMVLLISAPVILIDEILKLAVRSQRRLTKEKQA 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01998 1052 ProSitePatterns E1-E2 ATPases phosphorylation site. 366 372 IPR018303 -
Spst4g01998 1052 SUPERFAMILY Calcium ATPase, transduction domain A 136 244 IPR008250 -
Spst4g01998 1052 PRINTS Sodium/potassium-transporting ATPase signature 357 378 - -
Spst4g01998 1052 PRINTS Sodium/potassium-transporting ATPase signature 981 1005 - -
Spst4g01998 1052 Gene3D - 59 1041 - -
Spst4g01998 1052 SUPERFAMILY HAD-like 362 832 IPR036412 -
Spst4g01998 1052 SFLD Haloacid Dehalogenase 345 780 - -
Spst4g01998 1052 SMART Cation_ATPase_N_a_2 7 81 IPR004014 -
Spst4g01998 1052 FunFam Calcium-transporting ATPase, putative 211 360 - -
Spst4g01998 1052 Gene3D - 361 773 IPR023214 -
Spst4g01998 1052 FunFam Calcium-transporting ATPase, putative 111 246 - -
Spst4g01998 1052 CDD P-type_ATPase_SERCA 9 1041 - -
Spst4g01998 1052 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 792 1046 - -
Spst4g01998 1052 Pfam haloacid dehalogenase-like hydrolase 361 742 - -
Spst4g01998 1052 Pfam Cation transporter/ATPase, N-terminus 9 76 IPR004014 -
Spst4g01998 1052 SFLD p-type atpase 345 780 IPR044492 -
Spst4g01998 1052 Pfam E1-E2 ATPase 130 344 - -
Spst4g01998 1052 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Spst4g01998 1052 PRINTS P-type cation-transporting ATPase superfamily signature 752 764 - -
Spst4g01998 1052 PRINTS P-type cation-transporting ATPase superfamily signature 642 652 - -
Spst4g01998 1052 PRINTS P-type cation-transporting ATPase superfamily signature 620 631 - -
Spst4g01998 1052 PRINTS P-type cation-transporting ATPase superfamily signature 364 378 - -
Spst4g01998 1052 PRINTS P-type cation-transporting ATPase superfamily signature 728 747 - -
Spst4g01998 1052 PANTHER CALCIUM-TRANSPORTING ATPASE 15 1048 - -
Spst4g01998 1052 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 371 624 IPR023299 GO:0000166
Spst4g01998 1052 Gene3D - 374 627 IPR023299 GO:0000166
Spst4g01998 1052 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 374 627 - -
Spst4g01998 1052 SUPERFAMILY Calcium ATPase, transmembrane domain M 7 1043 IPR023298 -
Spst4g01998 1052 Pfam Cation transporting ATPase, C-terminus 813 1038 IPR006068 -
Spst4g01998 1052 Gene3D - 26 248 - -
Spst4g01998 1052 FunFam Calcium-transporting P-type ATPase, putative 622 773 - -
Spst4g01998 1052 NCBIfam HAD-IC family P-type ATPase 701 813 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Spst4g01998 1052 NCBIfam HAD-IC family P-type ATPase 302 389 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01998 Spst-Chr4 60666112 60670882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01998 2 1050 Primary Pumps ATPases(2) AT4G00900 78.348 0.0 1706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01998 K01537 - gmx:100792952 1986.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01998 4 60666112 60670882 Spst4g01998 4 60666112 60670882 ECH