Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01992 ATGGAGGGGATGGCTCCCAATTCATGTGGAAGGCCTGTTTTAGAGAAGAAAGCAAGGCCACAAGAGCAACTGAATTGTCCAAGGTGCAATTCAACGAACACAAAGTTCTGTTATTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAGACATGTAGAAGGTATTGGACAGAAGGAGGGTCTCTGAGAAACGTTCCAGTTGGAGGTGGTTCAAGAAAGAACAAGAAGGTGTCTTCAGCAGCAGGAGCCACAGCTTCATCATCATCATCATCATCATCATCAAAGGTTCCAGACCTAAACCCCCCAAACCTCTCGGTCTCGGTCTCAGCTCTATCTTCCCAAAACCCTAAAATAATGCATGGTGGCCAAGATCTGAACCTGGCCTTCCCAGCTATGGACAAGTATCATCATGGCATGTCCCCTTATGTTGAGATGCAAAACAGTGACACCACCCCTCATCACCAAAACTCTCCTTCTTGTTCTGCTCCTCCAACTTCTCTGTCAGCTCTTGAGCTGCTAAGGTCCAGCATGGCATCCAGGGGTTTGAACCCTTATGCTCCTTCTTCATTGATGCCAAACTCAGCAAATAACAATGCCCTTTACCCATCAGGATTTCCCATGCAAGAAGTTAAACCAAGCCTTAGTTTTTCCTCAGTTGATGGGATGGGAAATAGATCATATGATCACCAGGTCCAAGAGAGGGGTGGCAGAGTTTTGTTCCCTTTTGGAGATGTCAATAAACAGCTTTCTGCTGCAGGATCTGCTGAAGTGGAACACAATAAAGAACAACAACAACAACAACAAGGGAACTCAACTGGATATTGGACTGGGATGATTGGTGAAGGGACATGGTAA 861 0.4576 MEGMAPNSCGRPVLEKKARPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKVSSAAGATASSSSSSSSSKVPDLNPPNLSVSVSALSSQNPKIMHGGQDLNLAFPAMDKYHHGMSPYVEMQNSDTTPHHQNSPSCSAPPTSLSALELLRSSMASRGLNPYAPSSLMPNSANNNALYPSGFPMQEVKPSLSFSSVDGMGNRSYDHQVQERGGRVLFPFGDVNKQLSAAGSAEVEHNKEQQQQQQGNSTGYWTGMIGEGTW 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01992 286 MobiDBLite consensus disorder prediction 1 21 - -
Spst4g01992 286 MobiDBLite consensus disorder prediction 79 110 - -
Spst4g01992 286 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 195 IPR045174 GO:0003700|GO:0006355
Spst4g01992 286 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Spst4g01992 286 MobiDBLite consensus disorder prediction 65 110 - -
Spst4g01992 286 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Spst4g01992 286 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01992 Spst-Chr4 60627296 60628156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01992 16 286 C2C2-Dof Transcription Factor Family AT3G61850 48.464 4.45e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst4g01992 zf-Dof 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01992 - - gmx:778110 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01992 4 60627296 60628156 Spst4g01992 4 60627296 60628156 ECH