Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01991 ATGGGAAGGGCTCCTTGTTGTTCTAAAGTAGGGTTGCATAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAATATATCCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGCGGGAAAAGTTGTAGATTGAGATGGATGAACTATCTGAGACCAGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATCAGAATGCACTCACTTTTGGGGAATAGATGGTCCCTCATAGCAGGAAGGTTACCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAACACCCATCTATGCAAAAAGCTGAAAAATCAAGGAACAGATGATACTGACACACCCAATACGTTGGAGCGTCCTCAACAAGAACCTGCCAGTGGCAACAAAAAGAAGAAGAACGGTGGCAAAAAGAAGAACAAGCAGAAGAACAAAGGAGGCACAAATAATGCTGAGCCACCAAAGACACAAGTTTATCTACCAAAACCAATTAGAGTGAAGGCTTTGTATTTACCAAGAACAGATAGTAACACCTTCACCTTTGATTCCAATTCAGCTAGTGCATCAACAAGCCAAGAGAAGGAGGAAAGCCCCTTGACAAAAGAATTAAACTTGGCTAGTGAAATTGGAAATATGGGAGAAAGTGATGGCTTTGGCTTCTTCAGTGAGGATCGTGACTTGGTCAACGCCTCAGATATTGAATGCCACTCTTATTTTCCCACAGATCATGGCTCGCTACAGCAACTATACGAAGAATATTACCACCTCTTGAACATGGACCATAGCCAATTCGTAGAAATGAATTCATTTGGGGAATCTTTATTGGTGTGA 867 0.4106 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKNQGTDDTDTPNTLERPQQEPASGNKKKKNGGKKKNKQKNKGGTNNAEPPKTQVYLPKPIRVKALYLPRTDSNTFTFDSNSASASTSQEKEESPLTKELNLASEIGNMGESDGFGFFSEDRDLVNASDIECHSYFPTDHGSLQQLYEEYYHLLNMDHSQFVEMNSFGESLLV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01991 288 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst4g01991 288 MobiDBLite consensus disorder prediction 122 136 - -
Spst4g01991 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst4g01991 288 Gene3D - 14 66 - -
Spst4g01991 288 CDD SANT 16 61 IPR001005 -
Spst4g01991 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst4g01991 288 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst4g01991 288 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Spst4g01991 288 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst4g01991 288 MobiDBLite consensus disorder prediction 117 171 - -
Spst4g01991 288 MobiDBLite consensus disorder prediction 192 206 - -
Spst4g01991 288 MobiDBLite consensus disorder prediction 192 211 - -
Spst4g01991 288 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst4g01991 288 FunFam Myb transcription factor 11 67 - -
Spst4g01991 288 CDD SANT 71 112 IPR001005 -
Spst4g01991 288 FunFam MYB transcription factor 68 128 - -
Spst4g01991 288 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 215 - -
Spst4g01991 288 Gene3D - 71 165 - -
Spst4g01991 288 SMART sant 66 114 IPR001005 -
Spst4g01991 288 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01991 Spst-Chr4 60588719 60589811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01991 1 144 MYB Transcription Factor Family AT4G38620 67.361 5.21e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01991 Myb_DNA-binding 9.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01991 K09422 - gmx:100101857 482.641