Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01979 ATGGACCAACCGCCACACCACCACAACAGCGCCACCACCTCCTCCTCCGCCGATAAGCCCGCCACTCCGCGCGGAGGCACGCGCCACCCGCTCTTCCGCGGCGTCCGCAAGCGCCGCTGGGGAAAATGGGTGTCCGAAATCCGGGAGCCGCGCAAGAAATCGCGCATATGGCTCGGCTCCTTCCCGGCGCCGGAGATGGCGGCGAAGGCCTACGATGTCGCCGCCTACTGCCTCAAGGGCAGAAAGGCGCAGCTCAATTTCCCCGACGAGGTCCACCGCCTCCCGCCGCTTCCTTCCGCCTGCACCGCCCGCGACATCCAGGCCGCCGCCGCCAAGGCCGCCAGCATGATGATGGTCCAGGCCGCCGCCACTGACTCTCCGGAGAAGAGCAGCATTACCTCTGACTGCGACCACGCCGCCGATGACTTCTGGCGCGAGATTGAGCTGCCGGAGCTCCTTCACGGAAAGTGGTGGACCTCCTCCGGCGACGCCTCGCCGTGGACGGAGGCTGACCTCCCGCCTCAGCAACCCTTCCCCACGGCGTGCTTGTAG 552 0.6793 MDQPPHHHNSATTSSSADKPATPRGGTRHPLFRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPPLPSACTARDIQAAAAKAASMMMVQAAATDSPEKSSITSDCDHAADDFWREIELPELLHGKWWTSSGDASPWTEADLPPQQPFPTACL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01979 183 MobiDBLite consensus disorder prediction 1 21 - -
Spst4g01979 183 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Spst4g01979 183 MobiDBLite consensus disorder prediction 164 183 - -
Spst4g01979 183 PRINTS Ethylene responsive element binding protein signature 70 90 IPR001471 GO:0003700|GO:0006355
Spst4g01979 183 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Spst4g01979 183 MobiDBLite consensus disorder prediction 1 33 - -
Spst4g01979 183 CDD AP2 30 89 IPR001471 GO:0003700|GO:0006355
Spst4g01979 183 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Spst4g01979 183 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Spst4g01979 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 152 - -
Spst4g01979 183 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Spst4g01979 183 SUPERFAMILY DNA-binding domain 31 90 IPR016177 GO:0003677
Spst4g01979 183 FunFam Ethylene-responsive transcription factor 2 30 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01979 Spst-Chr4 60473736 60474287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01979 1 183 AP2-EREBP Transcription Factor Family AT1G01250 53.846 6.12e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst4g01979 AP2 7.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01979 K09286 - gmx:100806544 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01979 4 60473736 60474287 Spst4g01979 4 60473736 60474287 ECH