Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01978 ATGGTCAACAAAACGCCAAGTGAATATGAGATTAGATGCGGTTGGTCTTCACGTGTTCCTCCAACTTCAACCCCCTTCACTTACAACTTAGGAAGAAAGAAAGAGAGAAGTGAGTCCGGAGTTAGAGAACTTGTTTCCCCTTTTGGGCACTTTTTGGGTTTCGTTGATTTTCCGGAACCCGAAGTTGAAGTTCTGCGAGATATAAGGTTTCTGGATTTGGGTTTGCAAAAGTTGAGATTTTGCTGGGGTTTGGGGATGAAGATTGAGGTGGGGTTGGGAGGGGTGTGGAATGAGGAAGAGAAAGCGGCAGTGGTGGAGGTTCTGGGTCGCGGCGCGTTTGATTACTTGGTGGCGAATTCGGTTTCGAATGAGAATCTGTTGATGGCGTTTGGGAGCGGCGAGAATCTGCAGAATAAGCTTTCGGATCTCGTGGAGCGTCCCAACGCGTCGAACTTCAGTTGGAACTACGCGATCTTCTGGCAAATTTCTCAGTCCAAGTTTGGGGATTGGGTTTTGGGATGGGGAGATGGGTGTTGTAGGGAACCGAGGGAGGGAGAAGAGGGTGGAAAGGTGAGAGGGAGAGGGATTGTTGCTGATGATGAGAAGGTGCAGAGGATGAGGAAGAGGGTGTTGCAGAAGCTGCACATGACTTTTGGGGGTTCGGATGAGGACAATTATGCTTTTGGGTTGGACCGTGTTACTGACACGGAGATGTTCTTTCTTGCTTCCATGTACTTCTCTTTTCCCCGTGGACTCGGGGGTCCAGGTAAGTGTTTTGCTTCCGGGAAACATTTGTGGCTCTCGGATGTGTTCAAATCTGATTTTGATTACTGTGTGAGGTCTTTCTTGGTCAAATCTGCTGGAATTCAGACTGTTGTTTTGGTGCCTACTGACATGGGGGTGGTGGAGATGGGGTCTGCGAGGATGGTGGGTGAGAGTTTTGAGCTTTTGCAGGCTGTGAAATCTGTGTTTTCTGCTCAGACATCATTGGTCCCTCTCAGGGTTAAACCAATTGCACCATTGGATTTGGTGAGTGATAGTAGAGACGACACTGCAAATGCCCTTTTTTCTGGTGCGACAATTGGCGATAAGGATAAGAATAACAACAATGGGAATAATAGAGCTGAGGGAATTGGAGTTCCAAAGATTTTTGGGCAGGATTTGAACAGTGTCACTCAATTCAGGGAGAAGCTTGCTGTGAGGAAAATGGATGAGAGGGCGAGGCCGTGGGGGGGTCATTCCAATGGGAATAGTATCGGCTTTCCGAATGGTGTTCATGGTTCTAGTTGGGGGGGCGTGAGGCAGCTCGGTCCTTCTGAAATTCTTGCTCCTAGGTTGGCCAGCTCCAGCACGATGCCTGTGCCGGAGCTAGCCAATGGCTCAAGGCATGATTTTGTGCATAGCAATTACCCGCAACAACGGCCCGCACAGATGCAAATTGATTTCTCAGGAGCCACTTCAAGGAGATCAATCATTGCTGAGTCTGAGATTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGAGAGTGAGTGTTGTTGATGACAGGAGGCCGAGGAAGCGGGGAAGGAAGCCGGCCAATGGAAGGGAGGAACCCCTCAATCATGTGGAGGCAGAGAGGCAAAGGCGTGAGAAGCTGAACCAGCGGTTCTACGCACTGCGCTCTGTTGTTCCAAATATCTCCAAGATGGACAAGGCATCACTGTTGGGAGATGCTATTGCTTACATCAATGAACTTCAAGCGAAACTCAAGACCATGGAGTCTGAGAGAGAGAGATTTGGCAGCACCTCTATAGATGGATCAGTATTGGAGGCCAATGCAAGAGCAGTAAATCATCATAATGGATCTCCTGATGTGGATGTTGAAGCTGCACAAGATGGGGTGATTGTAAAGGTTAGCTGTCCTATTGATGTTCACCCGGTTTCAAAAGTCATTCAAACCTTCAGAGAGGAAGAAATTGGTGTTGTCGATTCAAAACTTACTGCTGCAAATGATACTGTTTTCCATACATTTGTAGTTAAATCTCAAGGACCTGATCAGCTGACAAAGGAAAAGTTGATTGCATTATTTTCCAAAGAATCCAACCCCATACAGACATTGTGA 2100 0.4781 MVNKTPSEYEIRCGWSSRVPPTSTPFTYNLGRKKERSESGVRELVSPFGHFLGFVDFPEPEVEVLRDIRFLDLGLQKLRFCWGLGMKIEVGLGGVWNEEEKAAVVEVLGRGAFDYLVANSVSNENLLMAFGSGENLQNKLSDLVERPNASNFSWNYAIFWQISQSKFGDWVLGWGDGCCREPREGEEGGKVRGRGIVADDEKVQRMRKRVLQKLHMTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPRGLGGPGKCFASGKHLWLSDVFKSDFDYCVRSFLVKSAGIQTVVLVPTDMGVVEMGSARMVGESFELLQAVKSVFSAQTSLVPLRVKPIAPLDLVSDSRDDTANALFSGATIGDKDKNNNNGNNRAEGIGVPKIFGQDLNSVTQFREKLAVRKMDERARPWGGHSNGNSIGFPNGVHGSSWGGVRQLGPSEILAPRLASSSTMPVPELANGSRHDFVHSNYPQQRPAQMQIDFSGATSRRSIIAESEISDVEASCKEERVSVVDDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKTMESERERFGSTSIDGSVLEANARAVNHHNGSPDVDVEAAQDGVIVKVSCPIDVHPVSKVIQTFREEEIGVVDSKLTAANDTVFHTFVVKSQGPDQLTKEKLIALFSKESNPIQTL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01978 699 Gene3D - 523 594 IPR036638 GO:0046983
Spst4g01978 699 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 136 324 IPR025610 -
Spst4g01978 699 MobiDBLite consensus disorder prediction 512 537 - -
Spst4g01978 699 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 532 592 IPR036638 GO:0046983
Spst4g01978 699 SMART finulus 535 584 IPR011598 GO:0046983
Spst4g01978 699 Pfam Helix-loop-helix DNA-binding domain 533 579 IPR011598 GO:0046983
Spst4g01978 699 Coils Coil 568 595 - -
Spst4g01978 699 CDD bHLH_AtAIB_like 526 591 - -
Spst4g01978 699 PANTHER MYC 123 687 IPR045084 GO:0003700|GO:0006355
Spst4g01978 699 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 529 578 IPR011598 GO:0046983
Spst4g01978 699 FunFam Transcription factor bHLH13 522 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01978 Spst-Chr4 60422221 60427270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01978 95 698 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 52.606 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst4g01978 bHLH-MYC_N 9e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01978 - - gmx:100807078 976.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01978 4 60422221 60427270 Spst4g01978 4 60422221 60427270 ECH