Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01967 ATGACAACAAGAACTAGGCATTTGAAGAAATTGAAAGACGTTAGTGAATATTCAATGATGACGGGTAAATGGAAGAAAGGAAAATGTTTGGAGGCATGGATCAGAGGGAAGGTTGTAATCAACGCAGGAAGTGCATTGGTGGCGGAACACCGTCGAGAACGGAAATATTTAACTGCTTTTCTAAGTGGGGGTTTCGCGGTGCTCGAAATCGTCGATGTGGATGGTTGCAATAGCATGATAGTTAAGCGGACAATGAAAGCCGAAGCGCCGAACCTGAAACGATGCAAGATTGACGGTTCAGAGAATGCGATTCAGAAGAAGCGTAGGGTGAACGGGTTTTACTCGCTGGCAGTGCCGGGAGACGCTGAATATTTCAGCTGCGGTTCTGGTTCTTGGAGCAGTGAAGGCTCGTATTGGGGTGGCGGTGGTGAGGTTCAGTCCAATTCCAATTCTTTTCTGTTTGATAGGAAAATGGTGAAGGAGGCGCGTCGTCCTCCGCTTCTGCGGTCCTCACGTGGGCGCGTCCAGAAGCTTCCGTCGAGGTTCAATGACTCGGTTCTTGACGCAGATGGAGACTCGAGCTTTGAAGATAATGATAAGAGTTATGTGGAGGATGGAAGGGGTGACATTGGTGTGAGAGTGGAGAAGAGTGATAGTGTGTGTTGTTCGTCGAGTTTTGGGCGAAGGAGTGTTGTTATGGCTGAGAGTAATACGTCTGGGATTAGTTTTGAGGGTGTGGACCAAAAATCCAATGGGGGGAAGAGGAATGAGGTTTTCAAGCCCGAGGATTTTGCTTTGGGGGATATAGTTTGGGCTAAGTGTGGGAAGAGGTATCCGGCTTGGCCTGCTGTGGTGATTGATCCTGTCTTGGAGGCTCCAGATGATGATGTGCAGGACTATGCGTGGGTGAAGCAGGGAATGGTTTTCCCCTTCTCGGATTTCTTGGACAGGTTTCAGGGGCAAACCCGGTTGTACAAGAGCAAACCGAGTGACTTCCGCATGGCCCTGGAGGAGGCAATGCTGGCAGAAGATGGTGTTCTTGAATCACATTTGGGACGAGAGGAAGTAGCTGATGCAGAACCTCATCCTGCTGGCCTTATGGAGGCTACGTGTTATTATGTCGATGAAGAATACTACGGCCAGGATCTGGAGCCAATTATGAAGGAAGGACTGACGGATAAGTGCCTATATGTGGCTGCTTGTCTGTGGTGGAAGGATGGAGTGCCTATGATATATATTCTTCAGCTGGGGCTGGAACTAGAAAAAATAGAAGAAAAACCTAGAACGGCCAACAGGGAAAAACTAATTGGAGCCAAAGCCTGTTTCAACCAGAAGGAGGCACCGCTCCTATATGTAGGCTGTTACAAGGTATTGTGCGGGATGTGGTCTGATGTTGCCATGCAAAACCATAAAGAAGATCAAGGATTCAAATTCTACGAAAATCAAAACAATACTGTGGTATTTGCAAAAGGATTTGGCATCACTCAGATGGTGTGCTGTGATGGTTGTAATGTGTGGGTGCATGCTGAGTGTGATAAAATTACCAGCAAACTTTTCAAGGATCTGGAAAATATAGATTACTACTGTCCAGATTGCAAGGGGAAGTTCAAATGTAAATTACCAGCATCACAAACATACAAGCCAAAAATCAAATCAATAGAGAGCCAAAGATCTTTGATACCTGATAATGTATTGGTGGTGTGCAATGGCATGGAAGGAATGTATATCCCAAAGCTTCATCTGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTTAGTGAATGGGAAAAACATACAGGTTGCAGAGCAAAAAAATGGAAACATAGTGTGAAAGTGAAAAGTACAATGCTACCACTGGAAAAATGGATGGCAGAACACATTCCACTAGAGGGAATATCTCAACAGTTAGATCAACAGCAGCCATATGAGAAGTATGAGCCTGTTAATGCAAAATGGACAACAGAAAGATGTGCTGTTTGCAGATGGGTTGAAGATTGGGAAGATAACAAAATTATTATTTGTAACAGATGCCAAATAGCAGTCCACCAAGAGTGCTATGGGGCAAAACATGTTCAGGATTTAACTTCTTGGGTTTGCAGAGTATGTGAAACTCCTGATGTTGAGAGAGAGTGTTGCCTCTGCCCAGTAAAAGGCATTTATCTAAGAATCCTAGGTGGTGCTCTAAAGCCAACTGATGTTGAAATGTTGTGGGTTCATGTAACGTGTGCTTGGTTTCGACCTCAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCTATGGGAGTCCTTAAAATTCCTCCTAATTCATTTGTCAAGACTTGTGTGATTTGTAAACAGAGCCACGGTTCCTGTATAACTTGTTGCAAGTGTGCTACATATTTTCATGTGATGTGTGCATCAAGGGCAGGATATACCATGGAACTGCATTCCATGGAGAAGAATGGAACTCAAATAACAAAGAAGCTAATATATTGTGCAGTTCACAGGGTCCCAAATCCAGATTCAGTACTTGTCGTACACACACCCCTGGGGATTTTCTCTCCCAGAACATCGCTTCAAGATCAGAAGGGATGCTTGAGGGGATCAAGGCTAATTTCATCAAAGAATATAGAGCTTATTGAATCTTCAACCACCGAAAATGACGTAGTTGAGCCATTGTCTTCTGCCAGATGCCGTGTCTACCGTAGGTCTCCTAGTAAGAGGGCCGATGTGCCAATAATTCACCGGCCGACAGGACCCAGCCTTCATTCTCTTGGTGCAGTAACTCAGTTGAACCTGTATAAGGATGGTGATGAATCTAAAGTATTCACTTCTTTCAAGGAACGTCTTCACCATTTACGGAAAATGGAAAAATTGAGAGTTTGCTTTGGAAAATCGGGCATTCATGGATGGGGCCTATTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTACCGTGGCGTGCATGTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAATACCGCTCAGAAGGCAAAGATTGCTATCTGTTCAAGATTAGTGAGGAAGTGGTAGTTGATGCAACTAACACAGGCAATATTGCACGTTTAATAAATCATTCTTGCATGCCAAACTGCTACGCAAGGATAATGAGTCTGGGTGATCAGGAGAGTCGGATTGTTCTTATTGCCAAGACTAATGTTTCTGCTGGTGAAGAACTAACGTACGATTACTTGTTCGATCCAGATGAGCGGGACGAGCTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGGAGATATATGAATTAG 3288 0.4462 MTTRTRHLKKLKDVSEYSMMTGKWKKGKCLEAWIRGKVVINAGSALVAEHRRERKYLTAFLSGGFAVLEIVDVDGCNSMIVKRTMKAEAPNLKRCKIDGSENAIQKKRRVNGFYSLAVPGDAEYFSCGSGSWSSEGSYWGGGGEVQSNSNSFLFDRKMVKEARRPPLLRSSRGRVQKLPSRFNDSVLDADGDSSFEDNDKSYVEDGRGDIGVRVEKSDSVCCSSSFGRRSVVMAESNTSGISFEGVDQKSNGGKRNEVFKPEDFALGDIVWAKCGKRYPAWPAVVIDPVLEAPDDDVQDYAWVKQGMVFPFSDFLDRFQGQTRLYKSKPSDFRMALEEAMLAEDGVLESHLGREEVADAEPHPAGLMEATCYYVDEEYYGQDLEPIMKEGLTDKCLYVAACLWWKDGVPMIYILQLGLELEKIEEKPRTANREKLIGAKACFNQKEAPLLYVGCYKVLCGMWSDVAMQNHKEDQGFKFYENQNNTVVFAKGFGITQMVCCDGCNVWVHAECDKITSKLFKDLENIDYYCPDCKGKFKCKLPASQTYKPKIKSIESQRSLIPDNVLVVCNGMEGMYIPKLHLCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSTMLPLEKWMAEHIPLEGISQQLDQQQPYEKYEPVNAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKHVQDLTSWVCRVCETPDVERECCLCPVKGIYLRILGGALKPTDVEMLWVHVTCAWFRPQVVFQNHEAMEPAMGVLKIPPNSFVKTCVICKQSHGSCITCCKCATYFHVMCASRAGYTMELHSMEKNGTQITKKLIYCAVHRVPNPDSVLVVHTPLGIFSPRTSLQDQKGCLRGSRLISSKNIELIESSTTENDVVEPLSSARCRVYRRSPSKRADVPIIHRPTGPSLHSLGAVTQLNLYKDGDESKVFTSFKERLHHLRKMEKLRVCFGKSGIHGWGLFARRDIQEGEMVVEYRGVHVRRSVADLREAKYRSEGKDCYLFKISEEVVVDATNTGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRRYMN 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01967 1095 Pfam PHD-finger 669 703 - -
Spst4g01967 1095 ProSiteProfiles Zinc finger PHD-type profile. 654 705 IPR019787 -
Spst4g01967 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 536 IPR013083 -
Spst4g01967 1095 ProSiteProfiles SET domain profile. 953 1070 IPR001214 GO:0005515
Spst4g01967 1095 FunFam Histone-lysine N-methyltransferase 706 832 - -
Spst4g01967 1095 Pfam PWWP domain 267 342 IPR000313 -
Spst4g01967 1095 Pfam PHD-finger 496 534 IPR019787 -
Spst4g01967 1095 SUPERFAMILY SET domain 949 1091 IPR046341 -
Spst4g01967 1095 ProSitePatterns Zinc finger PHD-type signature. 657 702 IPR019786 -
Spst4g01967 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 706 831 IPR013083 -
Spst4g01967 1095 CDD PHD_ATX3_4_5_like 656 702 IPR042011 -
Spst4g01967 1095 SMART set_7 953 1076 IPR001214 GO:0005515
Spst4g01967 1095 SUPERFAMILY FYVE/PHD zinc finger 496 540 IPR011011 -
Spst4g01967 1095 SMART PHD_3 656 703 IPR001965 -
Spst4g01967 1095 SMART PHD_3 774 830 IPR001965 -
Spst4g01967 1095 SMART PHD_3 487 533 IPR001965 -
Spst4g01967 1095 SMART PostSET_3 1079 1095 IPR003616 -
Spst4g01967 1095 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 75 1095 IPR025780 -
Spst4g01967 1095 Pfam SET domain 964 1069 IPR001214 GO:0005515
Spst4g01967 1095 Pfam PHD-zinc-finger like domain 710 829 - -
Spst4g01967 1095 CDD SET_SETD1-like 942 1091 - -
Spst4g01967 1095 SUPERFAMILY Tudor/PWWP/MBT 256 354 - -
Spst4g01967 1095 ProSiteProfiles Post-SET domain profile. 1079 1095 IPR003616 -
Spst4g01967 1095 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 705 IPR013083 -
Spst4g01967 1095 SUPERFAMILY FYVE/PHD zinc finger 655 716 IPR011011 -
Spst4g01967 1095 Gene3D SET domain 931 1095 IPR046341 -
Spst4g01967 1095 Gene3D - 254 348 - -
Spst4g01967 1095 PANTHER PHD FINGER PROTEINS 162 1072 - -
Spst4g01967 1095 ProSiteProfiles Extended PHD (ePHD) domain profile. 708 830 IPR034732 -
Spst4g01967 1095 FunFam Histone-lysine N-methyltransferase 928 1095 - -
Spst4g01967 1095 SMART PWWP_4 264 312 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01967 Spst-Chr4 60304345 60319896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01967 657 816 C2H2 Transcription Factor Family AT3G14740 32.934 2.57e-18 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Spst4g01967 zf-HC5HC2H_2 8.1e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01967 - - gmx:100793624 1579.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01967 4 60304345 60319896 Spst4g01967 4 60304345 60319896 ECH