Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01965 ATGGGCATCTTGGAGGTCCTTTTTCCGTTCTTCATCTTTCCTGTCATATATGCCTCAAATGATTGCCGATTTTCCTTTTGTGGCAGCAATAGTATCATTATCCGTTTCCCCTTTCAACTGGAAGATGAGCAAAATCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGCACGAATAATAGCAGAGCAGTGCTAAAACTTCCTTACTCCGGGGTATTCTACGTGCGCAACATTAACTACCTCACACAAAAGATACAAGTTTACGACCCTGATGATTGCCTCCCCAAACGTCTTCTGAGCCTCAATGTCTCAGGCTCTCCTTTTATTCACACTTTTACTCGTAATTACACCTTCTTAAGCTGCCCATTTCTGAAAGCAGGATCGCAATACATTCCTATTGACTGCCTCAGTAATTCCACACATTTTGTACTTGCTGTCCCTTCAATGAACTTGCCCAATCCACTGCCTACATCTTGCTATGTTATTACTAGTCTTTTTGTCCCAGTTGCAGGGCCTGAGCAGCAGTACGGGGGTAGTTTCAAAGGTGAGCTTAGTGAAGATCTTCTACTAACATGGGATACACCTGACTGCAGATATTGTGAATCACAAGAACAATTGTGTGGTTTTGATTTAAACGACAACAATCAACTCTCGTGTTTCTCTTACCAAACAGGTGCATCGCAACAAGGAATCCAAATTTTCAGAATCATCACATTATGCATTGCTGAACCAGCAGCAATCTTTGCCATTGTGATGGCATGCTGCGTGTGCTACAAGGACAGGCTTGCCATCATTCGTAACAATGCTATTGCGAGGTCTGCACCAGCCACAATATCACCAGCACCACAGATTGTGACAACCACGGGTTTGGACGAGTCCACCATTGAGTCCTATGAGAAGGTGGTGCTTGGAGAGAGTAAACGAGTCCCTGGACCCAACGATGGTTGCTGTTGGATATGCTTATCTGAGTACAATAGCAAAGACACGGTACGATGCATTCCTGAATGCCAACACTGCTTCCATGCAGATTGCATAGACGAGTGGCTTCGCATGAATCCTACATGCCCAGTTTGTCGTAACTCTCCCTCTCCTCTTCAGCTTACGTCCCTTGACCCCTGA 1119 0.4459 MGILEVLFPFFIFPVIYASNDCRFSFCGSNSIIIRFPFQLEDEQNPYCGYPGFNLICTNNSRAVLKLPYSGVFYVRNINYLTQKIQVYDPDDCLPKRLLSLNVSGSPFIHTFTRNYTFLSCPFLKAGSQYIPIDCLSNSTHFVLAVPSMNLPNPLPTSCYVITSLFVPVAGPEQQYGGSFKGELSEDLLLTWDTPDCRYCESQEQLCGFDLNDNNQLSCFSYQTGASQQGIQIFRIITLCIAEPAAIFAIVMACCVCYKDRLAIIRNNAIARSAPATISPAPQIVTTTGLDESTIESYEKVVLGESKRVPGPNDGCCWICLSEYNSKDTVRCIPECQHCFHADCIDEWLRMNPTCPVCRNSPSPLQLTSLDP 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01965 372 Pfam Ring finger domain 317 359 IPR001841 -
Spst4g01965 372 SUPERFAMILY RING/U-box 310 362 - -
Spst4g01965 372 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Spst4g01965 372 SMART ring_2 317 358 IPR001841 -
Spst4g01965 372 Pfam Wall-associated receptor kinase C-terminal 157 221 IPR032872 -
Spst4g01965 372 CDD RING-H2_EL5-like 316 359 - -
Spst4g01965 372 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 363 IPR046948 -
Spst4g01965 372 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Spst4g01965 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 364 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01965 Spst-Chr4 60294706 60297757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01965 24 366 C3H Transcription Factor Family AT2G25410 43.840 4.99e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01965 - - gmx:100798415 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01965 4 60294706 60297757 Spst4g01965 4 60294706 60297757 ECH
Spst6g00574 6 5230809 5231729 Spst4g01965 4 60294706 60297757 PCT