Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01962 ATGACTGCAAAGGGACAGAGATTTGTGAGGTTCAAGGATTGGAAGTCACTTTCATCTTCGAGTATTGAGCACAATGATTCCAATAGTGACGGATTTCAAAAAAGAAAAGTCCAATCAAGCGTAAGTTCTGTCAGTGATGAATCAATAAGAAATTTATCTTGCAGGAGCCGTGTTCTTCATCCACAGGGGCCAACACTTCAGAAGTGGAACAAAATTTTTGTAATCACAAGTGTGATGGCAATTTCTGTGGACCCACTTTTCTTTTACATTCCAGTGATCGATGACAAGAAAAAATGCCTTGATTTGGATGGAACACTGAAGATTACTTCCAGTGTTCTCCGCACATTCTTTGATCTTTTCTACATTCTTCACATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCCTCTCGTGTGTTTGGAAGGGGTGAGCTTGTTGATGACACTTCAGCCATAGTGATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATGATCGTATTCCCATCATGCTCGGTTCCTTATGTGGGAAAGGATTTGTTGAAGTATACAATAATAGCCCAGTACGTGCCAAGACTTCTGCGGATCTACCCTTTATTCAAAGAAGTTACAAGCACTTCTGGCATATTGACCGAGACGGCATGGGCTGGAGCAGCTTACAATCTTTTTCTCTACATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAAGGGTGAGGTGCTGGCGCAGGCAGTTGAAGAATACTACATTCTTTCATGAATCCTTCCTTAGCTGTGGACCTGGACAGTCTATTGTTCAATCACTTCTCAATCATTCTTGCCCTATCACTGATCCACAAGACATTGTAGACCTGGAAGCTTTCAATTTTGGAATGTTCGTGGAAGCTCTAAAGTCTCGGGTGGTAGAATCAACCACTGATTTTCATCACAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAGTGTAAGTTCTGTTGGTCAAGGTCTCCAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCTGTCTTCGGATTGGTTCTATTTGCATCACTTATTGGAAACATGCAGAAATATCTACAATCTACCACTGTCAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCCGATTTCCTGAAGCAGAGAATTAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCGCAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTAGAACTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTAAAGCCAGTCCTGTACACAGAGAAAAGTCACATAGTTCGTGAAGGGGATCCAGTTGATGAGATGCTCTTCATCATGCGTGGAACACTTGCAACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAACTCCTTTGAGATCAAGGCTGGTGATTTCTGTGGAGAAGAGCTTCTAACATGGGCCTTGGACCCCAACTCCTCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCATGATGACTTGAAATGCGTTGCTTCCCAATTTCGACGTCTTATAAACAGCAAACAACTCCAACACACTTTCAGGTTCTACTCCGTGCAATGGAAGACATGGGGTGCATGTTTCATACAAGCAGCATGGCGTAGATACAGAAAAAAGAAGGCAGAGAGGAAGTTACGTGAAGCAGAAGAAAGGATACAAAATTTGGAAAACGAGGAAGGGTCTTCACCTAGCTTTGTTGCCACTGTATATGCATCAAGGTTTGCATCAAGTGCATTGCGCCATTTGCGAAGTGGTAAACGCACCAGAGTGCCACAGCCACAGAGATTGCTACCCCTGATGCCTCAGAAGCCTTCTGAGCCAGATTTCACTGCTCAGAAAAACTAG 2082 0.4246 MTAKGQRFVRFKDWKSLSSSSIEHNDSNSDGFQKRKVQSSVSSVSDESIRNLSCRSRVLHPQGPTLQKWNKIFVITSVMAISVDPLFFYIPVIDDKKKCLDLDGTLKITSSVLRTFFDLFYILHIIFQFRTGFIAPSSRVFGRGELVDDTSAIVMRYLSSYFIIDILSIIPLPQMVILAMIVFPSCSVPYVGKDLLKYTIIAQYVPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESRVRCWRRQLKNTTFFHESFLSCGPGQSIVQSLLNHSCPITDPQDIVDLEAFNFGMFVEALKSRVVESTTDFHHKFFYCFWWGLRSVSSVGQGLQTSTYVGEIIFAIFIAVFGLVLFASLIGNMQKYLQSTTVRVEEMRIKRRDAELWMSHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLELLKKVPMFENMDNQLLDALCDKLKPVLYTEKSHIVREGDPVDEMLFIMRGTLATATTNGGRTGFFNSFEIKAGDFCGEELLTWALDPNSSSNLPISTRTVETISEVEAFALMHDDLKCVASQFRRLINSKQLQHTFRFYSVQWKTWGACFIQAAWRRYRKKKAERKLREAEERIQNLENEEGSSPSFVATVYASRFASSALRHLRSGKRTRVPQPQRLLPLMPQKPSEPDFTAQKN 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01962 693 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 688 - -
Spst4g01962 693 MobiDBLite consensus disorder prediction 17 36 - -
Spst4g01962 693 FunFam Cyclic nucleotide-gated ion channel 1 391 455 - -
Spst4g01962 693 Coils Coil 617 637 - -
Spst4g01962 693 MobiDBLite consensus disorder prediction 661 693 - -
Spst4g01962 693 FunFam Cyclic nucleotide-gated ion channel 1 462 580 - -
Spst4g01962 693 PRINTS EAG/ELK/ERG potassium channel family signature 427 434 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst4g01962 693 PRINTS EAG/ELK/ERG potassium channel family signature 333 350 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst4g01962 693 PRINTS EAG/ELK/ERG potassium channel family signature 359 370 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst4g01962 693 PRINTS EAG/ELK/ERG potassium channel family signature 377 386 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst4g01962 693 PRINTS EAG/ELK/ERG potassium channel family signature 242 252 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst4g01962 693 PRINTS EAG/ELK/ERG potassium channel family signature 125 134 IPR003938 GO:0005249|GO:0006813|GO:0016020
Spst4g01962 693 Gene3D - 72 388 - -
Spst4g01962 693 Gene3D Jelly Rolls 462 582 IPR014710 -
Spst4g01962 693 Pfam Ion transport protein 69 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst4g01962 693 CDD CAP_ED 464 596 IPR000595 -
Spst4g01962 693 ProSiteProfiles cAMP/cGMP binding motif profile. 464 548 IPR000595 -
Spst4g01962 693 SUPERFAMILY Voltage-gated potassium channels 60 386 - -
Spst4g01962 693 SUPERFAMILY cAMP-binding domain-like 393 580 IPR018490 -
Spst4g01962 693 Gene3D Helix hairpin bin 391 455 - -
Spst4g01962 693 SMART cnmp_10 464 595 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01962 Spst-Chr4 60262957 60267420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01962 1 690 Ion Channels AT5G53130 61.634 0.0 879
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01962 K05391 - gmx:100795201 1196.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01962 4 60262957 60267420 Spst4g01962 4 60262957 60267420 ECH