Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01959 ATGGGATACTTATCACAACCATCAGAACACTCAAACGTGAAACCAGTCTCACTTGCGAAGATGGATGAGAATGGAGAATTATGTTCTTATGCTTCCTGGCTAGGAAAGCATCCTTCTGCTTTGGACAATTTTGATGAAGTGATGAGCATTGCTGAGGGGAAAGAGATTGTTGTGTTTTTGGACTATGATGGAACACTGTCACCGATTGTAGATGACCCTGATAAGGCTTATATGAGTGATGCTATGCGCGCAGCTGTACGTGAAGTTGCTTATTGTTTCCCCACTGCCATTGTTAGTGGAAGGCGCAAGGATAAGGTGTATGAGTTTGTGAAGTTAAAGAATGTTCGCTATGCTGGAAGTCATGGTATGGATATATCAACTCCATTAGGGTCTTCAAAATGTGAAGATCAGAAGCATCAGATAAAGGCTGTTGATGAAAAGGGTAATCATGTTGTTCACTTTCATCCTGCAAAAGAATTTTTGCCAACAATCCAAGAGATAATTAAGGTTTTGAAAGAAAATACAAGAAGAATAAAGGGCTCTATGATTGAGGATAACATGTTCTGTGTCACTGTACACTACCGGTGTGTGAAAAATGAAGAGGATGTTAGTGCTCTCAGAGAAATGGTGGAGTCCATAATGAAACCTTACCCCAGTTTTCACATATCAAGAGGAAGAAAGGTTATGGAGATACGTCCAAATGTAAACTGGGACAAAGGACGTGCTCTTATGTATTTGCTTGACACTCTTGGGTTTGACAACTTCAACAATGTTCTTCCAATGTACCTTGGGGATGATAAAACTGATGAAGATGCTTTTAAGGTTATAAGAAACATTGGACGTGGTTTTCCCATTGTTGTTTCTTCAATTGCAAAGGAGACGGAGGCTTCTTATTCCCTGCGTGGCCCTTCTGATGTGCTGGCTTTCTTGATTCGTTTGGCAAAATGGAAGAAGAACCTGTCACAGAAAAGGGGCTAA 978 0.4059 MGYLSQPSEHSNVKPVSLAKMDENGELCSYASWLGKHPSALDNFDEVMSIAEGKEIVVFLDYDGTLSPIVDDPDKAYMSDAMRAAVREVAYCFPTAIVSGRRKDKVYEFVKLKNVRYAGSHGMDISTPLGSSKCEDQKHQIKAVDEKGNHVVHFHPAKEFLPTIQEIIKVLKENTRRIKGSMIEDNMFCVTVHYRCVKNEEDVSALREMVESIMKPYPSFHISRGRKVMEIRPNVNWDKGRALMYLLDTLGFDNFNNVLPMYLGDDKTDEDAFKVIRNIGRGFPIVVSSIAKETEASYSLRGPSDVLAFLIRLAKWKKNLSQKRG 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01959 325 NCBIfam trehalose-phosphatase 54 314 IPR003337 GO:0003824|GO:0005992
Spst4g01959 325 CDD HAD_TPP 57 308 - -
Spst4g01959 325 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 22 322 IPR044651 GO:0004805|GO:0005992
Spst4g01959 325 Pfam Trehalose-phosphatase 59 304 IPR003337 GO:0003824|GO:0005992
Spst4g01959 325 SUPERFAMILY HAD-like 57 319 IPR036412 -
Spst4g01959 325 FunFam - 56 108 - -
Spst4g01959 325 NCBIfam HAD-IIB family hydrolase 58 277 IPR006379 -
Spst4g01959 325 Gene3D - 56 154 IPR023214 -
Spst4g01959 325 Gene3D - 155 324 IPR023214 -
Spst4g01959 325 FunFam Trehalose 6-phosphate phosphatase 163 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01959 Spst-Chr4 60229921 60233141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01959 58 310 Trehalose Biosynthesis Gene Families AT1G60140 26.154 1.57e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01959 K01087 - gmx:100799466 524.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01959 4 60229921 60233141 Spst4g01959 4 60229921 60233141 ECH