Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01958 ATGAAGCCCCGCACTCTCCCTCTTCTCTCTCGCACCTTCTTCTTCCCTCCCTCCAAATTCCTCCGAAACGCACCGTTTAAACCTCGCGCCTTCTCCGCCCGGGCCCACGCCCGCGACAAGCCTCCCGTGCGCCCCTCCAAGAGCCTTGTCGACGACGAGGCCGAACTCAGCGACTGGGTCGACGAGTTGCGGACTGGCCGGGCCGACAAACTCACCCAGCGGTTCGGCAACGACGATGATGAAGACCGCGAATTCAGGCCGCCGCGGAGGTACGACAATAGGGCTTCCACCAATTTGGGGAAGAGGAAAGGGGAGGATTCGAGGAGGGGAAGGCAAAATGCGGGTGCAAGGAGAAAGTTTCAGCCGAAGAGTGACGACGATGAGGAAGTGGCGGAGAGGGGAAGGAAGTTCAAGGGTGGTGGCATTGGAGCGTTTCTCAGCGAAGATGAAAGTGAAGATGAGGAGAGTGATGGGAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAGAACGGTCTGAACCGGACGACTACTGAACCGACTCCTAGACCATCTTCTCCTGGAGCTTCTGATTCTTATCTGAGTGAATCCAGATTTGACGAATGTTCAGTCTCCCCACTATCACTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACGGTTGTGCAGGAGGCTACACTTCCAGTGATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAAGACAGGCACTGGGAAAACAGTAGCATTTTTGCTTCCATCTATTGAAGTTGTGGTGAAGTCACCTCCAACTGATGGTGATCATAGGAGGCCACCAATTTTTGTGCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAGGCTGCAGCAGAGGCCAATAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACTAGGCTTGCTTTAGAACAAAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAGAATACTGCTGGTTTTGCAACTAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATAGAGAAGATAATTGCTGCAGTCCCAAAACAACGACAGACTCTAATGTTTTCTGCCACAGTTCCAGAAGAGGTGCGTCAAGTTTGCCATATTGCTTTGAGAAGAGATCATGAATTTATAAACACAGTTCAAGAGGGTACTGAGGAGACCCATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCATTGGACAAGCATTTTCCTTTCCTATATGTTCTTCTCAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTAGCTGAACTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCACGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGTAAGTCAAAGGGTCTCATCTTGGTTACTTCGGATGTATCTGCACGCGGAGTTGACTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCAGCAGATAGAGAACAGTATATACATCGACTGGGTAGAACAGGGCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTACTGGCTCCTTGGGAAGAGTTCTTTTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCCGTGCTGCCTTCAGTTGATCCTGATACTAAGAAAAAGGTACAAAAAGCTCTATCCCATGTAGAAATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCGAACAAGAAAGTGGGGCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGACAACCCTCCAGCTATTCCTAAGCTAGTCCTCGGTAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCCAAATAG 2019 0.4814 MKPRTLPLLSRTFFFPPSKFLRNAPFKPRAFSARAHARDKPPVRPSKSLVDDEAELSDWVDELRTGRADKLTQRFGNDDDEDREFRPPRRYDNRASTNLGKRKGEDSRRGRQNAGARRKFQPKSDDDEEVAERGRKFKGGGIGAFLSEDESEDEESDGSEEEEILNKSRTALFGQQNGLNRTTTEPTPRPSSPGASDSYLSESRFDECSVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTDGDHRRPPIFVLVICPTRELASQAAAEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFPFLYVLLKDHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPVLPSVDPDTKKKVQKALSHVEMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01958 672 MobiDBLite consensus disorder prediction 67 136 - -
Spst4g01958 672 SMART helicmild6 475 556 IPR001650 -
Spst4g01958 672 Pfam Helicase conserved C-terminal domain 456 556 IPR001650 -
Spst4g01958 672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 572 IPR027417 -
Spst4g01958 672 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 203 231 IPR014014 GO:0003724
Spst4g01958 672 Gene3D - 157 418 IPR027417 -
Spst4g01958 672 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 451 598 IPR001650 -
Spst4g01958 672 CDD DEADc_MSS116 210 419 - -
Spst4g01958 672 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 234 417 IPR014001 -
Spst4g01958 672 SMART ultradead3 222 435 IPR014001 -
Spst4g01958 672 MobiDBLite consensus disorder prediction 32 54 - -
Spst4g01958 672 MobiDBLite consensus disorder prediction 169 203 - -
Spst4g01958 672 MobiDBLite consensus disorder prediction 147 161 - -
Spst4g01958 672 MobiDBLite consensus disorder prediction 31 54 - -
Spst4g01958 672 MobiDBLite consensus disorder prediction 67 203 - -
Spst4g01958 672 Pfam DEAD/DEAH box helicase 228 405 IPR011545 GO:0003676|GO:0005524
Spst4g01958 672 PANTHER RNA HELICASE 157 605 - -
Spst4g01958 672 CDD SF2_C_DEAD 432 565 - -
Spst4g01958 672 Gene3D - 426 650 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01958 Spst-Chr4 60222203 60228255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01958 203 587 Eukaryotic Initiation Factors Gene Family AT3G19760 28.967 4.87e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01958 - - gmx:100795739 1132.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01958 4 60222203 60228255 Spst4g01958 4 60222203 60228255 ECH