Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01954 ATGGCAAACAAGGTGTTTGCTAGAAGATATTGCAGTGCTGGATGCCTTCATGCCACATACTTGGAAAAAGAGTTTTGGAATGAAATTGGTTGTGGGAAGATGGAAACTGTTGAATATGCATGTGATGTTGAAGGCAGTGCCTTTTCATCTTCTCCCATCGACCAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCAAGGTTGCCCAAATCAAGTTTACGGCTTTTGGAAACATCAATTCCGGGAGTAACAGCACCTATGTTGTACATTGGAATGCTTTTTAGTCATGTTGCTTTAGAATTTGAAAGGGTAGTCAGAGAACATGTGTACACTAATATTTTATCAAGTGACGGGGAAGATGGCGCCTTCGATGTTCTCCTAGGGAAAATAACTCTATTTCCACCAAATATTTTGTTAGAGCATGAAGTCCCTGTCTACAAGGTCGTTCAAAAGCCAGGGGAGTTTATAATAACCTTCTCCACAGTTGAAACCATGACTGAAGCCAGCATGATATGCTCTGGGGGAGGTCTTAACGTCTTGGTGGTTTAA 552 0.413 MANKVFARRYCSAGCLHATYLEKEFWNEIGCGKMETVEYACDVEGSAFSSSPIDQLGNSKWNLKKLSRLPKSSLRLLETSIPGVTAPMLYIGMLFSHVALEFERVVREHVYTNILSSDGEDGAFDVLLGKITLFPPNILLEHEVPVYKVVQKPGEFIITFSTVETMTEASMICSGGGLNVLVV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01954 183 PANTHER LYSINE-SPECIFIC DEMETHYLASE 2 99 - -
Spst4g01954 183 Pfam JmjC domain, hydroxylase 102 161 IPR003347 -
Spst4g01954 183 Gene3D Cupin 101 166 - -
Spst4g01954 183 Gene3D Cupin 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01954 Spst-Chr4 60174389 60175030 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01954 55 160 C2H2 Transcription Factor Family AT5G04240 35.294 2.28e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst4g01954 JmjC 3.2e-08 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01954 - - gmx:100798611 280.026