Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01947 ATGGAAGAGAGTTTGAAGTGTGAGCAAGTTGGTCTCATCGATGAGTTAATTCTAGGGAAGGAGCTAGCAAAGAAGCTTTGTGACCATCTACTCCCATCATCGTCCTCAACCTCCTCATCTCATGAAACAAATGAAGTCTTAATTGAGAAAATAATTTCCACCTATGAGAAGGCAATTGCCATGCTGAATTGTAAGGCTAATGTAGGAGAAAGTAAGGCCAAGAATGGCAGCAAGAGAGATTCCCATTGCTCGTTAACAAATGGTAGCCCCAGAAGTGAGGTTATGGAGCCTGAGTTTGAGCACAAAAATGTCTCTAAGAAAAGGGGTGAAAAAGTCCATGGTCTGATTTCTGATTTCAATTTGGGGTTCTTTGAAATGATGGAATTCAGAAAGACCATGCCAAGGTGGACAGAGCAAGTGAAGTTGTGCTTGGGAACAGCTGAAGGATCTCTGGAAGATGGCTACAGCTGGAGAAAATATGGGCAGAAGGATATTCTTGGAGCTAAGTTTCCAAGGGGATATTACAGATGCACATATAGAAACATTCAAGGATGTCTGGCCACTAAGCAATTGCAAAAGTCAGATGAAGACCCAATGATGTATGAGATAACCTACATAGGAAGACACACGTGCACCCAAGTAAATCACTTGAACAAGGCAGTGGTACCCCCATCAAAAACCAAGATGTGCATTGGAGAAAACAAGCACCAAACCCATCAAAAGAATCAACCACAAGAAGAGAAAATAGAGCAACCCCCAGAGACAATTTTTTCCTTTGGATCACCAGCTCTTGAAGTTAAAGTAGAGGGCTTGGACCACATGGAGGACATATTCCCTTCATTTTGCTTCTCTTCTCCATCAATAGGGTCTGAAAACGAGGACAACAACAACATATTCTCTTACACCATGATTGAGAACAACTTAATGGAAAGCTTCATATCTCCACCAACTTCAGAATCAAACATGTTCTGTCACTGGGGGAGCACTGGACTAGGCCAAAGTGTGCATAGCTCCCCGTCTGATATCACTGATATAGTTTCAACATCAACTTCAGTCACCACTTCACCAATAATGGACCTTGATTTCCTCCTTGATAAGATCGATTTCGACATAGGTTTCCCTATAAACACCACAGAACTTTGCACTTGA 1149 0.4204 MEESLKCEQVGLIDELILGKELAKKLCDHLLPSSSSTSSSHETNEVLIEKIISTYEKAIAMLNCKANVGESKAKNGSKRDSHCSLTNGSPRSEVMEPEFEHKNVSKKRGEKVHGLISDFNLGFFEMMEFRKTMPRWTEQVKLCLGTAEGSLEDGYSWRKYGQKDILGAKFPRGYYRCTYRNIQGCLATKQLQKSDEDPMMYEITYIGRHTCTQVNHLNKAVVPPSKTKMCIGENKHQTHQKNQPQEEKIEQPPETIFSFGSPALEVKVEGLDHMEDIFPSFCFSSPSIGSENEDNNNIFSYTMIENNLMESFISPPTSESNMFCHWGSTGLGQSVHSSPSDITDIVSTSTSVTTSPIMDLDFLLDKIDFDIGFPINTTELCT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01947 382 SMART WRKY_cls 151 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01947 382 MobiDBLite consensus disorder prediction 71 96 - -
Spst4g01947 382 SUPERFAMILY WRKY DNA-binding domain 150 213 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g01947 382 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 12 316 IPR044810 GO:0003700
Spst4g01947 382 ProSiteProfiles WRKY domain profile. 146 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01947 382 FunFam WRKY transcription factor 53 138 214 - -
Spst4g01947 382 Pfam WRKY DNA -binding domain 152 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01947 382 Gene3D WRKY domain 137 206 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01947 Spst-Chr4 60130676 60132693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01947 5 286 WRKY Transcription Factor Family AT4G23810 36.877 2.12e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst4g01947 WRKY 9.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01947 - - gmx:100170747 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01947 4 60130676 60132693 Spst4g01947 4 60130676 60132693 ECH
Spst2g00244 2 1904439 1905579 Spst4g01947 4 60130676 60132693 ECH
Spst6g00564 6 5165558 5167480 Spst4g01947 4 60130676 60132693 PCT