Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01920 ATGGTGCAGACTTTACGAGAGAAGTTTGAACCGGCGTGGCTGACATTGGCACTACAGGGAACGAATGCGATCTCCTCTTCTGCGAAACGGGGACACTGGTTCTTGCACTTGCGCTATTGGAGAAGAATGCGAGATGATTTTGGTCGTTTCGCTGCGCTTTCTGAAAACCGTTACAGTCACATTTGGGAGAGCTTCACTGCAATGGCGTTTGTTAAGGCTCAGAAATCGAAGGCCTACTTCAAGAGATATCAAGTGAAGTTCAAGAGAAGAAGACAGGGGAAAACCGATTACAGAGCCAGGATTCGGTTGATTAACCAGGATAAGAACAAATACAACACCCCAAAATATCGATTTGTGGTTCGATTTACCAACAAGGACATCATCGCTCAAGTAACATCTGCTAGCATTGCTGGCGATATTGTCCTTGCTGCAGCATATGCACATGAGCTGCCACGCTATGGTCTTGAAGTAGGCCTTACAAACTATGCTGCAGCTTATTGCACTGGGCTCTTGTTGGCCCGTCGGGTGCTTAAAAGGCTTGAAATGGACGAGGAGTATGAAGGAAATGTTGAGGCCACTGGAGAGGATTATTCAGTTGAACCTGCCGAGACCAGGAGGCCTTTCCGTGCTCTCCTTGATGTTGGTCTTATCAGGACTACCACAGGAAATCGTGTCTTTGGTGCCCTTAAGGGAGCTTTGGATGGAGGTTTAGATATTCCTCACAGTGACAAAAGGTTTGCTGGCTTTGATAAGGATAAGAAGGAGCTCGACGCTGAGGTTCACCGCAAATATGTCTTTGGTGGACATGTTGCTGCTTATATGAAGACCTTGATTGAAGATGAGCCAGAGAAATACCAGACACACTTCAGTGATTATATCAAGCGTGGAATAGAGCCTGATGGTTTGGAAGAGCTCTACAAGAATGTTCATGCTGCCATCCGAGCTGATCCTACTTTCAAGAAATCTGAGAAAGAGCCACCAAAGGAGCACAAGAGAACATCTGCTCCGGGCTTTTGGTACAACCTGAAGAAGCTTACCTACGAAGAGAGGAAGGCCAAGTTGATTGCACGCTTGCAAGCTCTCAACTCTGCAGCTGGTGACGACGAAGATGATGATGATGAGTGA 1125 0.4676 MVQTLREKFEPAWLTLALQGTNAISSSAKRGHWFLHLRYWRRMRDDFGRFAALSENRYSHIWESFTAMAFVKAQKSKAYFKRYQVKFKRRRQGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQVTSASIAGDIVLAAAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKRLEMDEEYEGNVEATGEDYSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKDKKELDAEVHRKYVFGGHVAAYMKTLIEDEPEKYQTHFSDYIKRGIEPDGLEELYKNVHAAIRADPTFKKSEKEPPKEHKRTSAPGFWYNLKKLTYEERKAKLIARLQALNSAAGDDEDDDDE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01920 374 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 81 242 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 PRINTS Ribosomal protein L5 signature 151 171 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 PRINTS Ribosomal protein L5 signature 211 230 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 PRINTS Ribosomal protein L5 signature 87 106 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 PRINTS Ribosomal protein L5 signature 231 250 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 PRINTS Ribosomal protein L5 signature 273 293 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 PRINTS Ribosomal protein L5 signature 110 129 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 Pfam Ribosomal L18 C-terminal region 302 362 IPR025607 -
Spst4g01920 374 FunFam 60S ribosomal protein L5 68 365 - -
Spst4g01920 374 PANTHER RIBOSOMAL PROTEIN L5-RELATED 68 364 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 Hamap 50S ribosomal protein L18 [rplR]. 81 313 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Spst4g01920 374 Coils Coil 344 364 - -
Spst4g01920 374 Gene3D - 68 365 - -
Spst4g01920 374 CDD Ribosomal_L18_L5e 108 237 - -
Spst4g01920 374 SUPERFAMILY Translational machinery components 78 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01920 Spst-Chr4 59870174 59873024 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01920 68 366 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 79.933 2.82e-179 498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01920 K02932 - gmx:100818819 523.857