Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01892 ATGTCATCCTTCAACACCTTCTCTCCTCCACCCCCTACCCCTTACTTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGGGTTCTCTTCCTCATCTCTACCCTCATCCTCTCTTCCTACCTTTGCTGCCGCTCCCTCCGCCACCGCAACAACAACCGCCGTCATCGCCGCCACAACCCCCATGCCCCCGATGGCATCGTCCTCCCGCGCGTCATCTTCGTCGCCGAGGACGACGACGACGACGGTGCCCGCCACAACGACGCCGTCTCCGGCCTCGAACAGGTCGTCATAAACTCCTACCCCAAGTTCCCCTTCACGAAAGACGGCGGCTGCGACACCACGTGCTCCATCTGTCTCTGCGAGTATAAGGATTCGGAGATGCTGAGGATGATGCCCGAGTGTCGACACTACTTTCACCTCTGCTGTCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTGTGCCGGAACTCCCCCATGCCCACGCCGCTGTCCACGCCGCTGCAGGAGGTGGTGCCGCTCTCGCAGTACGCCGCTGATGCTAGGGGGAGGAGGTGA 570 0.6246 MSSFNTFSPPPPTPYFTNLGFGYSIAIALGVLFLISTLILSSYLCCRSLRHRNNNRRHRRHNPHAPDGIVLPRVIFVAEDDDDDGARHNDAVSGLEQVVINSYPKFPFTKDGGCDTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADARGRR 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01892 189 SMART ring_2 118 159 IPR001841 -
Spst4g01892 189 SUPERFAMILY RING/U-box 110 165 - -
Spst4g01892 189 Pfam Ring finger domain 117 160 IPR001841 -
Spst4g01892 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 165 IPR013083 -
Spst4g01892 189 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Spst4g01892 189 PANTHER RING-H2 FINGER PROTEIN ATL67 13 186 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01892 Spst-Chr4 59513730 59514299 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01892 6 180 C3H Transcription Factor Family AT5G06490 38.144 8.36e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01892 - - vra:106773185 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01892 4 59513730 59514299 Spst4g01892 4 59513730 59514299 ECH