Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01887 ATGGAAAGCCAAGACCCTCCAAACCCTCCACCACAAAACTCTCCTCCCTTCGTTTTCACTCCCACCACTTCAGTGATGCAAAACCCTTTGGAACCTCAAGGCTTGCATGATGACATAGACTGGGTAAACCTTTTCTCTGGCCAAAACAACTTCCTTGGGGATGCCAAGGCCATGACGGAATACGCTTCATCTTCATCCTCGTCTTCTTCGTCCTTGTCGTGCGCTTTGATGGCAGAAAATGAGGCTCACGTTGATGAAAAGAATGATAAAGAGAAAAGAAAAGGAGGCAGAATGAAGAAGACAACACGACCCAGGTTTGCGTTTCAGACTAGAAGTGCAGATGATATTCTGGATGATGGTTATCGTTGGAGGAAGTATGGGCAGAAAGCTGTGAAGAACAACATGCATCCCAGAAGCTACTACCGCTGCACCCATCATACATGCAATGTGAAGAAACAGGTGCAAAGGTTATCCAAAGACACGAGCATCGTGGTGACCACTTACGAGGGAATTCACAATCATCCATGCGAAAAGCTCATGGAAACCCTAACACCTCTTCTGAAACAGATGCAGTTTCTCTCTAGCATTAAATACTATTCTTACTTCTGGGTTTTTCGAGAGCTTATGTGTGATGAAGATGATTGCAAAGGGGCAACGTGCGACACGTATCATGATTAA 678 0.4513 MESQDPPNPPPQNSPPFVFTPTTSVMQNPLEPQGLHDDIDWVNLFSGQNNFLGDAKAMTEYASSSSSSSSSLSCALMAENEAHVDEKNDKEKRKGGRMKKTTRPRFAFQTRSADDILDDGYRWRKYGQKAVKNNMHPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHPCEKLMETLTPLLKQMQFLSSIKYYSYFWVFRELMCDEDDCKGATCDTYHD 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01887 225 SUPERFAMILY WRKY DNA-binding domain 110 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g01887 225 MobiDBLite consensus disorder prediction 1 17 - -
Spst4g01887 225 MobiDBLite consensus disorder prediction 83 102 - -
Spst4g01887 225 ProSiteProfiles WRKY domain profile. 112 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01887 225 MobiDBLite consensus disorder prediction 1 32 - -
Spst4g01887 225 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 56 178 IPR044810 GO:0003700
Spst4g01887 225 SMART WRKY_cls 117 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01887 225 FunFam WRKY transcription factor 57 103 177 - -
Spst4g01887 225 Pfam WRKY DNA -binding domain 118 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01887 225 Gene3D WRKY domain 102 176 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01887 Spst-Chr4 59497519 59500260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01887 87 196 WRKY Transcription Factor Family AT5G41570 73.451 4.20e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst4g01887 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01887 - - gmx:100810669 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01887 4 59497519 59500260 Spst4g01887 4 59497519 59500260 ECH
Spst1g01122 1 13631565 13632282 Spst4g01887 4 59497519 59500260 PCT