Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01880 ATGGACGTAGATTGGGATCTCCACGCCCTCGTCAGAAGCTGCACCACCACTTCCTCAGCGGCCGCCACTACCCCATCCACCACCTCATCCTGTATTTCTTCCTCTGGCTTTGGGGCTTGTACCCAACCTTCTACTTCCTGCAACTTCTTCTCTGTTTACAATCCTGCTGTACAAGCAGACCAAGTTTTGTCTCCTTTGGAGAATCCCTATGAAGCAAGGACTTCTTCCGTTGAAGAGCTTCAGCAGCTTTACAAGCCTTTCTTCCTTAAATCACAGCCTCAGACCTTTCAACCTGTTTCTTCTCTCTCTTCCTTTTCTTATTCATCAGTCTCGAAGCCACAGACTCAGACCTTTCAACCCGCTTCTCCTCTCTCGTCCTTTTCATACTCATCAGTATCCAAATCACCTAGCAGACAGCAAGAACAGAAACAGCCTCATCATGCTGGTTCTTCCTCCTCTCCAAGACCCAAAAGAAGGAAGAACCAGCTTAAGAAGGTTTGTGAAGTGTCAGCTGAAAACCTCTCTTCAGACATGTGGGCTTGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGATGTAGCAGCTCAAAAGGATGTTTAGCTAGGAAACAAGTGGAGAGGAACAGATCTGACCCAACAATGTTCGTACTCACATACACAGGTGAACACAACCACCCTGCTCCTACTCATAAAAACTCCCTTGCTGGCTCCACGCGCCACAAACCTCAGTCTGGTGAAGACGCAGTCACCAAACCATTTTCTCCAGCCACCTCATCAGAGGTGGCACAACACAGTACAAAGTCAGAGAGCACAGAAGAAGACATGGAAGATCTGATGAAAGATGATGAAGAACCAAATGAATTTGACTTAACAGAAACAATGATAACAGATGATTTCTTCGAAGGGTTGGAGGAGCTGACAGGGTCTGCCACTGATCCCTTTATAGCTGGTAGTAGCATTGATCGGTGGCCACTGGCCAATAATGGTGACACTGCCACTGGTGGTAGCTGA 1023 0.4721 MDVDWDLHALVRSCTTTSSAAATTPSTTSSCISSSGFGACTQPSTSCNFFSVYNPAVQADQVLSPLENPYEARTSSVEELQQLYKPFFLKSQPQTFQPVSSLSSFSYSSVSKPQTQTFQPASPLSSFSYSSVSKSPSRQQEQKQPHHAGSSSSPRPKRRKNQLKKVCEVSAENLSSDMWAWRKYGQKPIKGSPYPRCSSSKGCLARKQVERNRSDPTMFVLTYTGEHNHPAPTHKNSLAGSTRHKPQSGEDAVTKPFSPATSSEVAQHSTKSESTEEDMEDLMKDDEEPNEFDLTETMITDDFFEGLEELTGSATDPFIAGSSIDRWPLANNGDTATGGS 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01880 340 Gene3D WRKY domain 161 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g01880 340 SUPERFAMILY WRKY DNA-binding domain 171 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst4g01880 340 SMART WRKY_cls 175 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01880 340 MobiDBLite consensus disorder prediction 129 151 - -
Spst4g01880 340 MobiDBLite consensus disorder prediction 225 291 - -
Spst4g01880 340 Pfam WRKY DNA -binding domain 177 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01880 340 MobiDBLite consensus disorder prediction 254 269 - -
Spst4g01880 340 MobiDBLite consensus disorder prediction 129 163 - -
Spst4g01880 340 Coils Coil 265 285 - -
Spst4g01880 340 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 312 IPR044810 GO:0003700
Spst4g01880 340 MobiDBLite consensus disorder prediction 229 244 - -
Spst4g01880 340 ProSiteProfiles WRKY domain profile. 170 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst4g01880 340 MobiDBLite consensus disorder prediction 314 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01880 Spst-Chr4 59381163 59382644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01880 1 339 WRKY Transcription Factor Family AT4G01250 44.193 6.89e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst4g01880 WRKY 1.3e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01880 K13425 - gmx:100815829 431.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01880 4 59381163 59382644 Spst10g00920 10 9976422 9977669 ECH
Spst4g01880 4 59381163 59382644 Spst4g01880 4 59381163 59382644 ECH
Spst1g01120 1 13605337 13606934 Spst4g01880 4 59381163 59382644 ECH
Spst4g02318 4 63906552 63915374 Spst4g01880 4 59381163 59382644 ECH
Spst4g01880 4 59381163 59382644 Spst1g01120 1 13605337 13606934 ECH
Spst4g01880 4 59381163 59382644 Spst10g00920 10 9976422 9977669 PCT
Spst1g01120 1 13605337 13606934 Spst4g01880 4 59381163 59382644 PCT