Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01879 ATGGTGGACGGCGGCGATTTCGCCGGCACCATTTGCTCGATCTGCTACGAGCCTCTCAACCCTATTAACGAGGACCTCCAATCGGTCTCCATCTGCGGCCACGTCTTTCACGAGCTTTGTCTGCAGCAATGGTTCGAGTACTGTTCGAAAGGAAAGAAACGCACTTGCCCCATTTGCAAGCAGAGTTGCAGGGCAAGCGACGCGTGCAGGCTTTATTTTCAGTCAGTGGGGGACGCGAACGATGGTGGGAAGCTTCAGAAGCGCTTTGAAAGTGAGGAGAATGTTGGGGTACTGCGTATGGAAGTGAAGAGATTGGAGGTGAAAGTTTCGGGGCTTAATTCTGAGCTGGAACGGCAAACAAAGGAATTGGAAGGAGTTAAGGAGGAGCTTTGTATTTGCAAGGAGCAGGCAAAGATAGAAACAGCATTAAAGAATGAGGCTTTAAATCAAAAAGCATCCATACAATTCCAGTTTCATAAGAAATCAGAGGAGCTTGAGAAGTCAACTTTGGAGTCTTTTAGATTAAAAGAAAAGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACATTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTTGGTAATGGGGCCAACAGTAAAGACACAGTAGATACATTGAAAAAATCTTTGGTCATGCGGAACAGGAGTTATAAAGAATTGATGGCCAAGTGCAATGTTCTTGGAAGAGGTGAGGCCCGTTATAGCAAAAAACTTGAGAAGGCTAAAGAGAAGATCGCTAAACTGAAGGCAAGGGTACAAGAACTGGAGACATTAGCTGAAGCAAAAGAGAATGAATATTTGATGTCTCTGAAACTTTCAAAAAGCACAAAGAGTTCAAAGAATCTTGAGAGTAACTTCTTCAACTCTGATTCTGATGCATTGACAGCTTGTAAATTTTCATTGAAAGAACAAAGCAAACAGATCTCAACACCCAAATCTGGAATAAACCTGGCTGCAAATGACAACAGTAAATCTTTTCATTCTTTGAAGATAGAGAACTCCAGTGCTACTACAAATAAGACTGTGAATATTATTCATAGAACTCCTGATAAAAAGAGAGACTACATCACAATTGATGAAGATGATTTAGAAGGCACTAACGCTTTGCAAGGATGTTCACAACAAAACTACAAAGATCGAGACAGGGATAATATTGCTTTTAGCAAGCCTTCTCTAGCGAAGCTAGAGACCATGTCTACCACAAAGACCGAAACGTTATTCCAAGGAAAATGTACTTTGGCTGAGTCTCCCAGAGTTGATATTGAAATTGACATTTCTAACATTTCAGCTGGTCCTATGGATGAAGATGTAACTTTACAAACCACCATTAAACAACCTGTGGTGAACATTAGAAAGGAATCACCATTTACAATTTCAAATTCAGGTCCAGAGAATATATGCTTTTCTGGTGGTTTGCTTGGTCCTGATGGAACTCATCGGTTCTTGGGAAAATGGTGCAAGCGTGGACAGAACAGTGAATCATCATCTGCAAAGAGATCAAGTAATGGGGATTTAATAGCTGTTGGGGCTGATGGTAGAGGTGGTAGAATAAAAGTTCTAAGGACTCCTACCCAAATCCTCTCGGGTGGTAAGGAAAATTCAGCAAGTTCAAAACGGTCAAAGCTTGGACCTAAAACAAGTAGTTTGCATTCCCAGGGATGCCTTCAGATAGAACACTTTTTTGGGAGAGTCACTCAATAA 1746 0.4141 MVDGGDFAGTICSICYEPLNPINEDLQSVSICGHVFHELCLQQWFEYCSKGKKRTCPICKQSCRASDACRLYFQSVGDANDGGKLQKRFESEENVGVLRMEVKRLEVKVSGLNSELERQTKELEGVKEELCICKEQAKIETALKNEALNQKASIQFQFHKKSEELEKSTLESFRLKEKNMALAKELAALKLVSDLDIDEEEVLKLATFGNGANSKDTVDTLKKSLVMRNRSYKELMAKCNVLGRGEARYSKKLEKAKEKIAKLKARVQELETLAEAKENEYLMSLKLSKSTKSSKNLESNFFNSDSDALTACKFSLKEQSKQISTPKSGINLAANDNSKSFHSLKIENSSATTNKTVNIIHRTPDKKRDYITIDEDDLEGTNALQGCSQQNYKDRDRDNIAFSKPSLAKLETMSTTKTETLFQGKCTLAESPRVDIEIDISNISAGPMDEDVTLQTTIKQPVVNIRKESPFTISNSGPENICFSGGLLGPDGTHRFLGKWCKRGQNSESSSAKRSSNGDLIAVGADGRGGRIKVLRTPTQILSGGKENSASSKRSKLGPKTSSLHSQGCLQIEHFFGRVTQ 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01879 581 SMART ringv_2 11 60 IPR011016 GO:0008270
Spst4g01879 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 178 IPR013083 -
Spst4g01879 581 MobiDBLite consensus disorder prediction 541 565 - -
Spst4g01879 581 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 579 - -
Spst4g01879 581 Pfam Ring finger domain 11 60 IPR001841 -
Spst4g01879 581 Coils Coil 246 280 - -
Spst4g01879 581 MobiDBLite consensus disorder prediction 539 565 - -
Spst4g01879 581 Coils Coil 102 129 - -
Spst4g01879 581 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Spst4g01879 581 SMART ring_2 12 59 IPR001841 -
Spst4g01879 581 MobiDBLite consensus disorder prediction 505 524 - -
Spst4g01879 581 SUPERFAMILY RING/U-box 11 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01879 Spst-Chr4 59362373 59366569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01879 456 581 C3H Transcription Factor Family AT4G01270 43.511 3.66e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01879 K11985 - gmx:100812811 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01879 4 59362373 59366569 Spst4g01879 4 59362373 59366569 ECH