Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01874 ATGGTGTCGCTCAACCCAAACCCCGCGCAAGGATTTTACTTCTTCGATCCATCCAATATGACTCTTCCCGGTGTCAATTCTATTCCGCCGCCACCGCCGCCGACGCAGACTCCGACTGCACCCCCCGTGGTGGAGGATCCGAATAAGAAGATCCGGAAACCCTACACGATTACCAAGTCCAGGGAGAGCTGGACCGAGCAGGAGCACGACAAGTTTCTAGAAGCTCTCCAATTATTTGATCGGGACTGGAAAAAGATTGAAGCATTTGTTGGTTCCAAAACTGTTATCCAGATAAGAAGTCATGCGCAGAAGTATTTTCTTAAAGTTCAGAAGAATGGAACAAGTGAACATGTTCCTCCTCCTCGGCCTAAGAGAAAAGCTACTCACCCGTATCCTCAAAAAGCTCCTAAAATCACTCCTACAGTATCCCAAGTTATGGGCCCACTGCAACCTGCATCTGCTTTCATTGAACCTGCATATATTTATAGCCCAGATTCTTCATCTGTGCTTGGAACTCCAGTTACTAACATGCCCTTGTCGTCTTGGAATTATAATGCTGTACCACCACCAGTCAATGTGCCACAAGTGACGAGAGATGACATGGGATTGACTGGAGCTGGACAAGCTATTCCTCTTAACTGTTGCTATAGCAGTAGTAATGAGAGCACCCATCCGACTTGGCCAAGTAGCAAGAAGATTAATCAAGGTGACCAAGGCAAGCCAACTAAAGCTCAGGGAACCAGGGTTCAGGTGGCCAGTGTGAATGGCGAGTGGAGAAAGACTCACCGGAAATCAGCTTCTTATTCATATAGATTTTACTTATCAATAGCTATAAAGTATGGTGACTGA 849 0.4641 MVSLNPNPAQGFYFFDPSNMTLPGVNSIPPPPPPTQTPTAPPVVEDPNKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKATHPYPQKAPKITPTVSQVMGPLQPASAFIEPAYIYSPDSSSVLGTPVTNMPLSSWNYNAVPPPVNVPQVTRDDMGLTGAGQAIPLNCCYSSSNESTHPTWPSSKKINQGDQGKPTKAQGTRVQVASVNGEWRKTHRKSASYSYRFYLSIAIKYGD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01874 282 Gene3D - 64 111 - -
Spst4g01874 282 SMART sant 60 108 IPR001005 -
Spst4g01874 282 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Spst4g01874 282 PANTHER SWI/SNF COMPLEX-RELATED 30 228 - -
Spst4g01874 282 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Spst4g01874 282 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Spst4g01874 282 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Spst4g01874 282 CDD SANT 63 106 IPR001005 -
Spst4g01874 282 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Spst4g01874 282 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Spst4g01874 282 MobiDBLite consensus disorder prediction 24 41 - -
Spst4g01874 282 MobiDBLite consensus disorder prediction 112 138 - -
Spst4g01874 282 ProSiteProfiles SANT domain profile. 59 112 IPR017884 -
Spst4g01874 282 MobiDBLite consensus disorder prediction 23 56 - -
Spst4g01874 282 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01874 Spst-Chr4 59305872 59309719 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst4g01874 Myb_DNA-binding 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01874 - - gmx:778090 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01874 4 59305872 59309719 Spst4g01874 4 59305872 59309719 ECH
Spst4g01874 4 59305872 59309719 Spst1g01113 1 13527574 13532605 ECH
Spst1g01113 1 13527574 13532605 Spst4g01874 4 59305872 59309719 PCT