Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01872 ATGTCGGTATACGACGCCGCTTTCGTCGACACAGAGCTTTCCAAACGCACTTCCATCTTCGGCCTCCGTCTCTGGGTCGTCATTGGCATCCTCGTCGGATCCCTCATCGTCATCGTCCTCTTCCTGCTCTCGCTCTGCCTCACCTCCCGCCGCCGCCACCACCACCACAAAAACCCCCTCCGCCGCCGCACCGCCGCCGTCCCTACGCCGCCCATCTCCAAGGAAATCCTCGAGATCGTCCACGTTCCCCCGCCGCCTGACACCGTCCACCTCCCGCCGCCGAAGCCGGAGACCCGCGCCGCCGCTACCTCTGCCGCGGTAGTGTACTCCAGTGGGGAGAGTAGGGGAACTGTGAGCGCATGCGAAACGGCTTCATCGCTGGGGAGCGGGAGTGTGGGCCCCGAAGTGTCGCATCTTGGGTGGGGGAGGTGGTACACGCTGAGGGAACTCGAAGCTGCTACTAACGGGTTGTGCGAAGAGAACGTGATTGGTGAAGGTGGCTATGGAATCGTGTATCGTGGGTTGTTACCTGATGGTACCAAGGTTGCTGTCAAGAACCTTTTGAATAATAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCTATTGGTCGTGTGCGGCACAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCGTACAGGATGCTTGTGTATGAATATGTTGACAATGGGAATCTTGAACAGTGGCTGCATGGGGATGTTGGAACTGTAAGCCCTGTAACTTGGGATATCCGCATGAACATTATACTGGGCATGGCAAAAGGATTGGCTTATCTTCATGAGGGTCTTGAACCGAAAGTTGTCCACCGAGATGTGAAGTCGAGCAACATCCTGCTTGATCGCCAATGGAATCCAAAGGTTTCTGATTTTGGGCTTGCTAAGCTTTTGTCTGCTGATCATAGTTATGTAACTACTCGAGTGATGGGGACGTTTGGTTATGTTGCACCTGAGTATGCTTGCACTGGAATGCTGACTGAGAAGAGTGATGTGTATAGTTTTGGGATACTTATCATGGAAATAATTACCGGAAGAAGTCCTGTTGATTATAGTAGACCACAAGGAGAGGTTAATTTAATAGAGTGGCTGAAAAGTATGGTTGGGAATCGAAAATCTGAGGAAGTAGTTGATCCTAAGCTTGCCGAAAAGCCATCTCCAAGGGCTCTTAAACGGGCTCTTTTGGTTGCTCTTCGATGTGTCGACCCTGATGCAGCAAAGAGACCTAAAATAGGACATGTTATCCACATGCTCGAGGCCGAGGACCTCTTATTTCGTGATGAACGAAGGGTTGGAGGAGAGTCTTCCCGTTCCCATCGTGATTATCAACTGGAGCATAAGGGCTCAGGATTAGATAAAAGGCAGACAGGTGGAGAAATCACTGATCAGAGTGAAGATGACAGTACTAGTAGTAGATATCACCAGCAGCAGCCCACTAGATGGAAATAA 1479 0.5098 MSVYDAAFVDTELSKRTSIFGLRLWVVIGILVGSLIVIVLFLLSLCLTSRRRHHHHKNPLRRRTAAVPTPPISKEILEIVHVPPPPDTVHLPPPKPETRAAATSAAVVYSSGESRGTVSACETASSLGSGSVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYRGLLPDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVDNGNLEQWLHGDVGTVSPVTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNPKVSDFGLAKLLSADHSYVTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIEWLKSMVGNRKSEEVVDPKLAEKPSPRALKRALLVALRCVDPDAAKRPKIGHVIHMLEAEDLLFRDERRVGGESSRSHRDYQLEHKGSGLDKRQTGGEITDQSEDDSTSSRYHQQQPTRWK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01872 492 SUPERFAMILY Protein kinase-like (PK-like) 135 429 IPR011009 -
Spst4g01872 492 CDD TM_EGFR-like 27 57 - -
Spst4g01872 492 MobiDBLite consensus disorder prediction 441 479 - -
Spst4g01872 492 Gene3D Phosphorylase Kinase; domain 1 138 232 - -
Spst4g01872 492 FunFam Putative receptor-like serine/threonine-protein kinase 233 442 - -
Spst4g01872 492 MobiDBLite consensus disorder prediction 441 492 - -
Spst4g01872 492 ProSitePatterns Protein kinases ATP-binding region signature. 163 185 IPR017441 GO:0005524
Spst4g01872 492 Gene3D Transferase(Phosphotransferase) domain 1 233 441 - -
Spst4g01872 492 ProSiteProfiles Protein kinase domain profile. 157 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01872 492 PANTHER OS01G0323000 PROTEIN 8 448 - -
Spst4g01872 492 SMART serkin_6 157 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01872 492 Pfam Protein kinase domain 160 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01872 492 CDD STKc_IRAK 163 429 - -
Spst4g01872 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Spst4g01872 492 FunFam Probable serine/threonine-protein kinase At1g01540 137 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01872 Spst-Chr4 59298446 59301576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01872 126 429 Receptor kinase-like Gene Family AT4G02010 46.429 6.40e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Spst4g01872 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01872 - - gmx:100777348 819.305