Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01856 ATGGCAGCCGTTAGGTCTTCCTCTGTCAGACGAATAGGAAGCACAATCAAGGTTTCTTTCAATATGGAACTAGTACAGCACTGTCAGCATCCGAACCTTGCAAGGTTGCCAAGTGATTCACCGAGTCATCCTTATTACAAAAGAGAGTTACAATTTGCTAAGAATCAGTTTAGCAATTTGGCTTCTGAATCCTTTGGAAGTGGTCACCAATTTGGTACTAGAGCCAATGTATCGTTTAATCCTAGATTCTCTAACTATTGTTTCCGGAGTGCTCTTCCTTTTGCCTCCGCGAGCCACGTGTTGAACCGCCGATTGTATTCATCGACGGTGGGTGATGACAAAGGAAGTAGAGATGGTGGTCCAGACGTCTCTGTTGGTTCTGGTGCGAGTGACATGAATACCAATGGTGATTCGGTTGTTGGGGGTGATTGGGGTGAGAGGATTAAAGATGCTTGGAAGAGTGTGGTAGAGTCAGCATCATATGCCGGGGAAAAGGTCAAAGCAACATCTGATGATCTCACTCCATATGCTCAGCAGTGGCTTGATTCACACCCATATCTTGATAAGGTGATTATTCCAGTTGGTGGTACTTTAACTGCTACTCTAATAGCTTGGTTCTTGATGCCTATGATTTTGAGGAAATTTCACAAATATGCTATGCAAGGTCCCGTTTCTCTATTGCCAGAAAGCATGTCTGGAGATCCGTTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAGGATCCAGTGCGATATTTAGTTACCTTCATGGCATTCTCACAAATTGGTGTAATGGTAGCTCCAACAACTATAACCTCAGAATATCTTACACCAGTTTGGAGGGGTGCAGTGATAGTTTCATTTGTATGGTTTTTACATAGATGGAAAACAAATGTTTTTGCACGGACATTATCAAGTCAAAGTTTACTTGGACTTGATAGGGAGAAAGTGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTCATTGGTATAATGGCTTTTGCTGAGGCTTGTGGTGTGGCCGTGCAATCTATTGTGACTGTTGGTGGTATAGGAGGAGTGGCTACTGCCTTCGCTGCCAAAGACATACTTGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCGAAGCCCTTTTCAGTTGGAGATACAATAAAAGCAGGCTCGATAGAGGGTCAAGTGGTGGAAATGGGTCTTACTACCACGTCTTTGCTGAGTTCAGAGAAGTTTCCAGTCATTGTACCAAACTCATTTTTTTCTAGCCAGGTTATTGTGAACAAGTCCCGTGCTGAATATCGTGCCATTATTACCAAAATTCCTCTGCAAACTGAGGATTTAAGTAAGATTCCACAGATATCAGATGATGTAAAAAGTATGCTCAAATCAAATGCAAAGGTTTTCTTGGGGAAAGATGTTCCCTACTGTTTCTTATCCCGCATAGAAAGTTCGTATGCAGAATTGACTCTTGGATACAACCTCAAACATATGCGCAGAGATGAACAATACTCTGCTGAACAAGAAATTCTGCTGCTGGCAGTTCAGACCATTAAGAATCATGGGGTTGCCCTTGGCAGCACATGGCAAGAAATGCCTTCTAAATGA 1608 0.4241 MAAVRSSSVRRIGSTIKVSFNMELVQHCQHPNLARLPSDSPSHPYYKRELQFAKNQFSNLASESFGSGHQFGTRANVSFNPRFSNYCFRSALPFASASHVLNRRLYSSTVGDDKGSRDGGPDVSVGSGASDMNTNGDSVVGGDWGERIKDAWKSVVESASYAGEKVKATSDDLTPYAQQWLDSHPYLDKVIIPVGGTLTATLIAWFLMPMILRKFHKYAMQGPVSLLPESMSGDPFPYEKSFWGAMEDPVRYLVTFMAFSQIGVMVAPTTITSEYLTPVWRGAVIVSFVWFLHRWKTNVFARTLSSQSLLGLDREKVLALDKISSIGLFVIGIMAFAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSVGDTIKAGSIEGQVVEMGLTTTSLLSSEKFPVIVPNSFFSSQVIVNKSRAEYRAIITKIPLQTEDLSKIPQISDDVKSMLKSNAKVFLGKDVPYCFLSRIESSYAELTLGYNLKHMRRDEQYSAEQEILLLAVQTIKNHGVALGSTWQEMPSK 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01856 535 Pfam Mechanosensitive ion channel 322 524 IPR006685 GO:0016020|GO:0055085
Spst4g01856 535 SUPERFAMILY Sm-like ribonucleoproteins 364 429 IPR010920 -
Spst4g01856 535 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 276 363 IPR011014 GO:0016020
Spst4g01856 535 Gene3D - 275 379 - -
Spst4g01856 535 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 144 528 - -
Spst4g01856 535 Gene3D - 380 428 IPR023408 -
Spst4g01856 535 MobiDBLite consensus disorder prediction 109 142 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01856 78 529 Mechanosensitive Ion Channel Family AT4G00290 60.619 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01856 K22047 - gmx:100789047 909.827