Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01850 ATGGGGTTTCCGGTGTGTTGCGCGGAAGTGTACTTCCCTATCCCCTTCCTGCGCATGCCTGACATCCTTGGTTTCCTCCGCAACCTTGTTTTCTTCCTTGTACATGTCCTTGCCCTCCTCCACTTCCCCCATATCGAGGATCCCCTGTCCTCTACTGCCACCGCAACAGCCACCTCAGCTGCTGAAGTCGCCAGGCCCTCCGAAGTGTCGCCTCCTGTCATCAGGAGGCTCCTGCCTGTCGCCCGGTTCGGAGAGTCCAGGGAAAACGCATGCGAGTGCGCCGTCTGTCTGTGCGAGTTCTCTGAGGAGGTGGAGATTCGGCGCATGCGGAACTGCAACCACATTTTCCATCGCACCTGCGTGGACCCTTGGATCGATCAGAATCAGAAAACGTGCCCTATCTGTAGGACCCCCTTTGTGACCAATTAG 429 0.5734 MGFPVCCAEVYFPIPFLRMPDILGFLRNLVFFLVHVLALLHFPHIEDPLSSTATATATSAAEVARPSEVSPPVIRRLLPVARFGESRENACECAVCLCEFSEEVEIRRMRNCNHIFHRTCVDPWIDQNQKTCPICRTPFVTN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01850 142 SMART ring_2 93 135 IPR001841 -
Spst4g01850 142 ProSiteProfiles Zinc finger RING-type profile. 93 136 IPR001841 -
Spst4g01850 142 SUPERFAMILY RING/U-box 74 141 - -
Spst4g01850 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 140 IPR013083 -
Spst4g01850 142 PANTHER RING ZINC FINGER PROTEIN-RELATED 37 139 - -
Spst4g01850 142 Pfam Ring finger domain 92 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01850 Spst-Chr4 58827693 58828121 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01850 1 142 C3H Transcription Factor Family AT1G63840 36.111 7.12e-25 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01850 K16281 - vun:114167546 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01097 1 13427689 13428204 Spst4g01850 4 58827693 58828121 PCT