Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01849 ATGGGGTTTCCGGTGGGTTACGCAGAGGTCTTCTTCCCCAACCCCTTCCTCCACACGCTGGCCCTCCTCGGCCTCCTCCGAAACCTCGTATTCTTCCTCTTGCACCACCTCGGACTCTCCGACTTCCTCGAAACAGAGGTCACATGGCCGGATCCCCGGCCCTCCGACGCCGCAGCCAGGGCACCCTCCGTGTCGGCGCTCCTCATCCGGGACATCCTCCCCGTCGCCAAGTTTGGAGAGTCCGGAGAAGACTCGTGCACCTGCGCCGTCTGTCTGTTCGAGTTCTCCGAGGAGGAGGAGATTCGGTGCATGCGGAACTGCAAGCACATTTTCCATCGCGCCTGCGTGGACCGTTGGATCGATCACGATCAGAAAACGTGCCCTCTCTGTAGGACCCCCTTTGTGCCTGATGACATGCTTGATGATTATAATCAACGCCTCTGGGCCGCTTCTGGAATCAACGAGTTCTACGCCGATTACTCTTCTTCCTTCTGA 495 0.5879 MGFPVGYAEVFFPNPFLHTLALLGLLRNLVFFLLHHLGLSDFLETEVTWPDPRPSDAAARAPSVSALLIRDILPVAKFGESGEDSCTCAVCLFEFSEEEEIRCMRNCKHIFHRACVDRWIDHDQKTCPLCRTPFVPDDMLDDYNQRLWAASGINEFYADYSSSF 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01849 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 136 IPR013083 -
Spst4g01849 164 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Spst4g01849 164 SMART ring_2 88 130 IPR001841 -
Spst4g01849 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 38 150 - -
Spst4g01849 164 SUPERFAMILY RING/U-box 68 138 - -
Spst4g01849 164 Pfam Ring finger domain 87 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01849 Spst-Chr4 58823473 58823967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01849 1 163 C3H Transcription Factor Family AT1G63840 45.562 1.13e-48 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01849 K16281 - gmx:100500261 268.855