Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01843 ATGACTTCTCCCAATCGCCAACGCCGGCGATCCATCTCCGACCACCGCAGCACGCCGGGGAGAGTGCCCCCTTCTCCCGGATACGCCTCCTCCAAGCTCAACAGCTCCACGGATTCCGCCCGCCGGAACCCTGTCGCCGCTGCCTGGTCCTTGACCGGAATGTTCGCCTTGTGCTTCTCGCCGCCGGTGTCAGACAATTCCAAAAGCCTCGGGGATTCAGAGGAGTTCAAGTCTTCTTCCTCGGTATCGAATATTTCAAGAGCTGGTAGTCAGAGAGGGCGTGGCCCAAATGGAGGTATGAGCATAGGTTCATACAACGTAATACAAGGGAAAGAACCTGGCATTGTAAAGTTCACCATGGAGGAAATCTACCAAGTCACAAGAAATTTCTCCCCTTCTTTCAAGATTGGCCAAGGTGGTTTTGGTGCTGTGTACAAGGCAAAACTCCTAGATGGAAATGTTGTTGCAGTAAAGCGTGCTAAGAAGAGTGTATATGAGAAACATTTGGGGGTGGAGTTTCAGAGTGAGATCCAAACACTATCCCGGGTGGAACATTTGAACTTGGTCAAGTTCTATGGATATTTGGAGCAAGGGGATGAAAAGATCATTGTCGTTGAGTATGTTCCAAATGGAACCCTTAGAGAACATTTAGATTGCACTCATGGAAGCGTTCTGGACCTTGCTGCACGTATAGATATCGCAATTGATGTTTCTCATGCTATCACCTATCTTCATATGTACATAGATCATCCTATCATTCATAGAGACATAAAATCTTCAAACATTCTTCTCACTGAACATTTTCGAGCTAAGGTTGCAGACTTTGGTTTTGCTAGACATGCCCCAGACAGTGACTCTGGCATGACACATGTTTCCACCCAAGTCAAAGGAACTGCTGGATACTTGGATCCTGAATACCTGAAAACTTATCAACTAACTGAAAAGAGTGACGTGTATTCATTTGGAGTTTTACTGGTTGAACTTGTCACAGGAAGACGCCCCATTGAACCAAAATTTGAACTCAGGGAGCGAATAACGGCAAAATGGGCTATGAAAAGGTTCATTGAGGGAGATGCTATCACGGTCTTGGATCCAAGACTGGATCAGACTGCTGCAAACACTTTGGCATTACAGAAGATTCTTGAGCTAGCTTTACAGTGCTTGGCTCCACGTAGACAAAACAGGCCTACTATGAAGAGATGTGCTGAGGTCCTTTGGACCATCCGCAAGGACTTCAGAGAGGAGTTATCAGCTTCAAACTTCCGCTCATTTTCCACTACTTCCCAAAGGAGCAGCTCACTGAGAGAGTGA 1311 0.4661 MTSPNRQRRRSISDHRSTPGRVPPSPGYASSKLNSSTDSARRNPVAAAWSLTGMFALCFSPPVSDNSKSLGDSEEFKSSSSVSNISRAGSQRGRGPNGGMSIGSYNVIQGKEPGIVKFTMEEIYQVTRNFSPSFKIGQGGFGAVYKAKLLDGNVVAVKRAKKSVYEKHLGVEFQSEIQTLSRVEHLNLVKFYGYLEQGDEKIIVVEYVPNGTLREHLDCTHGSVLDLAARIDIAIDVSHAITYLHMYIDHPIIHRDIKSSNILLTEHFRAKVADFGFARHAPDSDSGMTHVSTQVKGTAGYLDPEYLKTYQLTEKSDVYSFGVLLVELVTGRRPIEPKFELRERITAKWAMKRFIEGDAITVLDPRLDQTAANTLALQKILELALQCLAPRRQNRPTMKRCAEVLWTIRKDFREELSASNFRSFSTTSQRSSSLRE 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01843 436 SUPERFAMILY Protein kinase-like (PK-like) 110 409 IPR011009 -
Spst4g01843 436 ProSiteProfiles Protein kinase domain profile. 130 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01843 436 CDD STKc_IRAK 136 405 - -
Spst4g01843 436 Gene3D Transferase(Phosphotransferase) domain 1 208 429 - -
Spst4g01843 436 SMART serkin_6 130 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01843 436 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 208 419 - -
Spst4g01843 436 ProSitePatterns Protein kinases ATP-binding region signature. 136 162 IPR017441 GO:0005524
Spst4g01843 436 Pfam Protein kinase domain 135 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01843 436 MobiDBLite consensus disorder prediction 68 103 - -
Spst4g01843 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Spst4g01843 436 MobiDBLite consensus disorder prediction 68 91 - -
Spst4g01843 436 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 2 91 207 - -
Spst4g01843 436 Gene3D Phosphorylase Kinase; domain 1 101 207 - -
Spst4g01843 436 PANTHER OS01G0750732 PROTEIN 45 420 - -
Spst4g01843 436 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01843 Spst-Chr4 58768730 58771720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01843 118 398 Receptor kinase-like Gene Family AT1G79620 45.614 1.70e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Spst4g01843 Pkinase 1.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01843 - - gmx:100792034 696.427