Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01841 ATGGGAGGTTGCTGTTGTTCTGCCAGGAAACCTCACCTGCATGGGACACCTGTGTATTACTATTGCCCACCAACTTCAGAAGAACGTGAGTCTGTAACATCAAATGATGGTACGACTACTTCACTCACTACTGGATTGCTGGTAGGCTTGAACCTGGAAGCTTCCTCACCTGAGACATACCAGCCTCCTCCTGCACCTCCTCCTTATGATATGGTCCTGGGAGGTCCAGCAACAACAGAATCTGAATCAGGCAGAGAAACAGTTAGTGCTAGTAGCTTTGAAACATTAATTACATGTGAAGATCTTGAAGAATCTGACTGTAAAGTTAAAGCTAATTCAACACCTATATCTCCAAGCAAGGCAGAGCTGTCAAAATCAAAAGAATTTCATGCATTAGTGACAGAAGAAGAGGACGACTGCCCAATTTGTCTTGATGAATATAATGTTGAGAATCCAAAAACTCTGACAAAATGTGAACACCACTTTCACTTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTTCTGTCCTATATGTGATCAGGAGATGATATTTGACCAGACACTGAACTAG 576 0.4236 MGGCCCSARKPHLHGTPVYYYCPPTSEERESVTSNDGTTTSLTTGLLVGLNLEASSPETYQPPPAPPPYDMVLGGPATTESESGRETVSASSFETLITCEDLEESDCKVKANSTPISPSKAELSKSKEFHALVTEEEDDCPICLDEYNVENPKTLTKCEHHFHLSCILEWMERSDFCPICDQEMIFDQTLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01841 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Spst4g01841 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 187 IPR013083 -
Spst4g01841 191 SMART ring_2 140 180 IPR001841 -
Spst4g01841 191 SUPERFAMILY RING/U-box 130 187 - -
Spst4g01841 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 35 188 - -
Spst4g01841 191 Pfam Ring finger domain 138 180 IPR001841 -
Spst4g01841 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01841 Spst-Chr4 58761139 58763014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01841 1 191 C3H Transcription Factor Family AT4G00335 58.639 4.91e-77 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01841 - - gmx:100804435 355.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01095 1 13380983 13383347 Spst4g01841 4 58761139 58763014 PCT