Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01840 ATGTTCCTATTTTTTCTTCTCTTCATTCTCATTCTTCACACATCCTCCACTACCAGCTCCACCATCATTCTCCAAGGTAACAACACTCTCCAAAGCCCCAACAACACTTTCCAACTTGGCTTCTTCAATTTCTTCCCAGGCCCGGGCCCACCCAAATTCTACCTCGCCATCCGCCGCACTTCCCTCCCCAACCCCAACACCATCTGGGTCGCCAACCGCCTCAAGCCCTCACCTTCCCAAACTGGTTCATCACTCCAACTAACCCGAACCGGTCAATTACTCTTAACCCATTTCAACACCACTATCTGGACCGCCACCACCAACAGCACCACCACAAACCTCTCCCTCAAGCTTCTCGAATCCGGGAACCTCGTTCTCCTCACTCCCAACGGCGTCGTTTCATGGCAGAGCTTCGATTCCCCCTCCGACACGTGGCTCCCCGGCATGAACCTCACGCGGTTCAACTCCCTCACATCATGGCGCACCGAGACGGACCCTTCCCCGGGGCCTTACTCCCTGCGGTTGAAGCCACCCTTCTACGGCGAGTTCGAGCTCGTCTTCAACGACACTGTTTCGTACTGGTCCACCGGGAACTGGACCAACGGGATATTCCTCAATGTCCCCGAGATGACCGTTCCCTACCTCTACGCTTTCCACTTCGCCGCGCCGTTCTCCCCCGACGCGACATTTGGCTTCTCCGAACGCGCCTCCGAGACCGGGCTCCACCTGCCTACGATGTTTCGCGTCGAGCCCTTCGGGCAGGTCAGGCAGTACACGTGGAACAGCCAGACGGGGTCGTGGAACAATTTTTGGTTCAAGCCAGATAGTGTGTGCCAGGTTCGGGGACTCTGCGGGAGGTTTGGAGTTTGCACTGGGGAAATATCCAAATCGTGTGAGTGTCTTAGTGGGTTTGAGCCTTTGGATGGTCATGGATGGGGTTCTGGTGATTACTCTCGAGGTTGTCATCGTGGGGATGCGGGGTGTGATGGGGATGATGAGTTTGAAGATCTGGGTGCTGTGAGCTTTGGATTTGGGAATGTGAGTCTAGTTAAAGGGAAATCTAGAAGCTTTTGCGAGCGCGAGTGTTTGGGTGATTGTGGGTGCGTTGGGTTGAGTTTCGACAAGCAGAGTGGGTTGTGTAAGAATTTTTATGGGTCGCTTTTGGATTTTCAGAATTTAACCAGCGATGGTGAGAGTGGGGTTTTGTATGTTAGGGTTCCGAGAGGAGGATCTAAGGGGAACGGGTTTGATAGGAAGGTTTTGAGTGGGGTTGTTATTGGATCGGTTGCGGTTTTGGGACTGGTGGTGGTGACGTTGTTGGTGATGGTGAAGAGGAGGGGTGGGAGAAAGGGGTTGGAGGAGGAGGATGGGTTTGTGCCTGTGTTGAATTTGCGGGTGTTTTCTTACAAACAGCTTCAGTTGGCGACTCGTGGGTTTTCGGAGAAGATTGGCCATGGAGGGTTTGGGACTGTGTTTCAGGGGGAGTTGAGTGATGCTTCAATTGTGGCTGTGAAGAGGTTGGAGAGGCCGGGGGGTGGGGAGAAGGAGTTCAGGGCTGAGGTCTCAACTATTGGGAATATTCAGCATGTGAATCTTGTGAGGCTCAGAGGGTTTTGCTCTGAGAATTCTCACAGGCTTTTGGTTTATGAGTATATGCAGAATGGTGCTCTTAGTGTTTATTTGAGGAAGGAAGGGCCTAGTCTGAGTTGGGATGTTAGGTTTAGGGTGGCTGTTGGCACTGCTAAGGGGATTGCTTATTTACATGAGGAGTGTAGGTGTTGCATCATACACTGTGATATCAAGCCTGAGAACATTCTTTTGGATGGTGATTTCACTGCCAAGGTTTCTGATTTTGGGTTAGCAAAGCTCATTGGAAGGGACTTCAGTAGGGTGTTGGCGACTATGAGGGGGACATGGGGGTATGTTGCGCCAGAGTGGATTTCTGGTGTGGCAATTACAACCAAGGCAGATGTTTACAGCTATGGAATGACATTGCTGGAGCTGATTGGCGGTCGAAGGAATGTGGAAGCACCGCCTTCTGCCGGTGGAGTTGGAGAGAGTGGTGGTGAGACTGGAGGGAAGTGGTTCTTCCCACCGTGGGCAGCACAGCGGATAATAGAAGGGAATGTGGATGAAGTGATTGATAAGAGGCTTGGTAATGTGTATAACATTGAGGAGGCTAGGAGGGTTGCTTTGGTGGCCGTATGGTGCATTCAAGATGATGAGGGTATTAGACCTACAATGGGTATGGTGGTGAAGATGTTGGAGGGGTGGGTTGAGGTGAGTGTTCCTCCACCTCCCAAGTTGCTTCAAGCGCTGGTTACAGGGGATTCCTTTCATGGGGTCAAGGCTGATTCAGGCACTGGTGTGTCTACCGGTGGAAGCTTATCTGATGGCAACTTGGAAGTGTCAACTGCTGATTCTGAATCATATACAGGGCACGTTTTTTCTCCATTGGATGTGAATGTTAATGTCAGTGTTAGATAA 2487 0.5147 MFLFFLLFILILHTSSTTSSTIILQGNNTLQSPNNTFQLGFFNFFPGPGPPKFYLAIRRTSLPNPNTIWVANRLKPSPSQTGSSLQLTRTGQLLLTHFNTTIWTATTNSTTTNLSLKLLESGNLVLLTPNGVVSWQSFDSPSDTWLPGMNLTRFNSLTSWRTETDPSPGPYSLRLKPPFYGEFELVFNDTVSYWSTGNWTNGIFLNVPEMTVPYLYAFHFAAPFSPDATFGFSERASETGLHLPTMFRVEPFGQVRQYTWNSQTGSWNNFWFKPDSVCQVRGLCGRFGVCTGEISKSCECLSGFEPLDGHGWGSGDYSRGCHRGDAGCDGDDEFEDLGAVSFGFGNVSLVKGKSRSFCERECLGDCGCVGLSFDKQSGLCKNFYGSLLDFQNLTSDGESGVLYVRVPRGGSKGNGFDRKVLSGVVIGSVAVLGLVVVTLLVMVKRRGGRKGLEEEDGFVPVLNLRVFSYKQLQLATRGFSEKIGHGGFGTVFQGELSDASIVAVKRLERPGGGEKEFRAEVSTIGNIQHVNLVRLRGFCSENSHRLLVYEYMQNGALSVYLRKEGPSLSWDVRFRVAVGTAKGIAYLHEECRCCIIHCDIKPENILLDGDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVAITTKADVYSYGMTLLELIGGRRNVEAPPSAGGVGESGGETGGKWFFPPWAAQRIIEGNVDEVIDKRLGNVYNIEEARRVALVAVWCIQDDEGIRPTMGMVVKMLEGWVEVSVPPPPKLLQALVTGDSFHGVKADSGTGVSTGGSLSDGNLEVSTADSESYTGHVFSPLDVNVNVSVR 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01840 828 FunFam S-receptor-like kinase 5 552 764 - -
Spst4g01840 828 ProSiteProfiles PAN/Apple domain profile. 328 406 IPR003609 -
Spst4g01840 828 Gene3D Phosphorylase Kinase; domain 1 453 551 - -
Spst4g01840 828 Pfam Protein kinase domain 480 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01840 828 SMART blect_4 21 141 IPR001480 -
Spst4g01840 828 Gene3D - 11 138 IPR036426 -
Spst4g01840 828 ProSiteProfiles Protein kinase domain profile. 477 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01840 828 FunFam Receptor-like protein kinase 4 440 551 - -
Spst4g01840 828 Gene3D Transferase(Phosphotransferase) domain 1 552 763 - -
Spst4g01840 828 SMART serkin_6 477 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01840 828 ProSitePatterns Protein kinases ATP-binding region signature. 483 505 IPR017441 GO:0005524
Spst4g01840 828 ProSiteProfiles Bulb-type lectin domain profile. 15 139 IPR001480 -
Spst4g01840 828 PANTHER OS07G0415500 PROTEIN 4 768 - -
Spst4g01840 828 CDD STKc_IRAK 483 757 - -
Spst4g01840 828 PIRSF SRK 1 810 IPR024171 GO:0004674
Spst4g01840 828 Pfam S-locus glycoprotein domain 194 306 IPR000858 GO:0048544
Spst4g01840 828 SUPERFAMILY Protein kinase-like (PK-like) 459 756 IPR011009 -
Spst4g01840 828 CDD PAN_AP_plant 328 407 - -
Spst4g01840 828 CDD B_lectin 23 141 IPR001480 -
Spst4g01840 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 595 607 IPR008271 GO:0004672|GO:0006468
Spst4g01840 828 SUPERFAMILY alpha-D-mannose-specific plant lectins 53 199 IPR036426 -
Spst4g01840 828 Pfam D-mannose binding lectin 67 153 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01840 Spst-Chr4 58752439 58754925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01840 467 765 Receptor kinase-like Gene Family AT5G20050 46.795 1.36e-80 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Spst4g01840 Pkinase 7.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01840 - - gmx:100778917 1324.3