Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01839 ATGCTGGCTGATGGGCGGGATGTGGATTTGTATAGGTTGTTTTTGGTGGTGAGAGGGAAGGGTGGATACGATGCCGTTTGCAATGGGAAGTTGTGGGATTCGGTTGGGGAGGAGTCTGGGATGGGTGTGAGTGTTGGGTCCTCTGTTGAGTTGGTTTACAGTAGGTACTTGAGTGCTTTAGATTCATGGATGAAGAAAGTTGCTGAGAGTAAAGTGTCTCCTGAGTGTGGTGTGGTGGATAATCGGGATAAGTTTGGGAGGCGGTTGATGGAGTTGCAGGCTGAGGTGAAAGGGTTGTTGTCAGGTTGTGCGGATGGCAGGGTTGTGGTTGGAGGGGATGTCGAGGGTGGACTTGATGAAGATGATGACAACCTGGATGGGAGGGAGTTGTGTGGTGCTAATGGGGTGAAAGGTAATGGTGATGAAGGAGGTGAACATAGAGAATCTTCTGATTCCGAGACGCCGGTCCATGACATGAATGGGGCGGTTCTTGGAATGTTGGGTGAGGGAAATGATGCAATGGAAGGGGTGAAAGGGTTTGATGGAGGGAAAGTGTCTCAAGAGCAGGCGGTGGATGGATCCGATGGGGCTAACAACAGTGGGGCTGGATTGGTAAGCGGAGGGAAGAAGTGTGACGGCAATGATAATAAGGACTTGGTGTTGGATCCATCTGGTGGTAATAGTGATGGTGATAGTTCTGGCCGCAAGAGGAAGAGGGAGGGGTCTGTGTTGGATTCATCTAGTGGTGATAGTGATAGTCCTAGTCGTAAGAGGACGCGAGAGTCTTCAATGAATATGCTGAACTGGGTTATAGGTGTTGCAAAGAATCCTAGTGATCCGGAAATAGGTTCAATGCCTGAAAAGTCAAAGTGGAAGTCTTATAGTAATCAGGTGGTGTGGAAGCAGATGCTGTTGTTTCGGGAGGCTGCGTTTTACAGAAGAGGTTCTGAGCCAAACAATGAACAACGCAATTGGCAGAATCAGAAGATGCACCCTTGCTTGTATGAAGATCAAGTTGGGACAAACTACAATCTCAGAGATAGGTTGAAATGTGACAAGAAGCTTTTGTTCGGCAAATCTACTGTGCGAAGCTCTTCTGATTCATCTGTAGGAACTGAGAACAGGGCATCAAGTCCTCATACTGAAGATCAATCTGAGAAACGGTCGCAAGATTCCCCAGATGCAAATTCAGGTCTTGACAGATGTGGCACAGTACGCATCCCTTTAGGGCCAAATCATCAAGCTGAAATACGAGAATGGACTGGCATGACTTCTGAAAGTGATTCTAAGTGGTTAGGGACTCGAATATGGCCACGGGCCACAGTAAATACCAGACTTATTGAAAGGGACCCCATAGGAAAGGGGAGACAAGATTCATGCGGCTGCTCAGAACAAGGTTCTGTTGAGTGTGTAAGATTTCACATTTCTGAGAAAAGGGCTAAAGTTCAGCTGGAATTGGGTACAGCATTTTATGACTGGAATTTTGATAAGGTAGGTGAAGATGTTAGGCTAATGTGGACGAAAGAAGACGAGAAAAAATTTGAGGATGTGGTACGATCAAACCCTCCATCACCTGAGACGTATGTCTGGGACTATATCTTTAGGGCTTTTCCTGATAAAAGCAGAGCAGATTTAGTTAGCTACTACTTCAATGTCTTTATTTTGCGGCGCAGAGGATACCAAAACAGGCATACTCCCGATAACATTGACAGTGATGACAACGACGATGAAGCTGGTCCACTGAGGAATGTTTTTGGACATCAGATACAGAATTCTGGACATCAGATGCAGAGTTCGCGCGGCTCCATCTTATTAACCCCCAAAAAGCCACATAAAAAGGGAAAATAG 1848 0.4637 MLADGRDVDLYRLFLVVRGKGGYDAVCNGKLWDSVGEESGMGVSVGSSVELVYSRYLSALDSWMKKVAESKVSPECGVVDNRDKFGRRLMELQAEVKGLLSGCADGRVVVGGDVEGGLDEDDDNLDGRELCGANGVKGNGDEGGEHRESSDSETPVHDMNGAVLGMLGEGNDAMEGVKGFDGGKVSQEQAVDGSDGANNSGAGLVSGGKKCDGNDNKDLVLDPSGGNSDGDSSGRKRKREGSVLDSSSGDSDSPSRKRTRESSMNMLNWVIGVAKNPSDPEIGSMPEKSKWKSYSNQVVWKQMLLFREAAFYRRGSEPNNEQRNWQNQKMHPCLYEDQVGTNYNLRDRLKCDKKLLFGKSTVRSSSDSSVGTENRASSPHTEDQSEKRSQDSPDANSGLDRCGTVRIPLGPNHQAEIREWTGMTSESDSKWLGTRIWPRATVNTRLIERDPIGKGRQDSCGCSEQGSVECVRFHISEKRAKVQLELGTAFYDWNFDKVGEDVRLMWTKEDEKKFEDVVRSNPPSPETYVWDYIFRAFPDKSRADLVSYYFNVFILRRRGYQNRHTPDNIDSDDNDDEAGPLRNVFGHQIQNSGHQMQSSRGSILLTPKKPHKKGK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01839 615 CDD SANT 506 553 IPR001005 -
Spst4g01839 615 MobiDBLite consensus disorder prediction 588 604 - -
Spst4g01839 615 SMART bright_3 1 66 IPR001606 GO:0003677
Spst4g01839 615 CDD ARID 4 61 - -
Spst4g01839 615 MobiDBLite consensus disorder prediction 114 264 - -
Spst4g01839 615 Pfam ARID/BRIGHT DNA binding domain 4 59 IPR001606 GO:0003677
Spst4g01839 615 MobiDBLite consensus disorder prediction 563 582 - -
Spst4g01839 615 MobiDBLite consensus disorder prediction 588 615 - -
Spst4g01839 615 MobiDBLite consensus disorder prediction 140 154 - -
Spst4g01839 615 MobiDBLite consensus disorder prediction 563 580 - -
Spst4g01839 615 MobiDBLite consensus disorder prediction 231 259 - -
Spst4g01839 615 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Spst4g01839 615 MobiDBLite consensus disorder prediction 379 394 - -
Spst4g01839 615 SUPERFAMILY ARID-like 4 68 IPR036431 GO:0003677
Spst4g01839 615 SMART ELM2_2 407 457 IPR000949 -
Spst4g01839 615 MobiDBLite consensus disorder prediction 362 408 - -
Spst4g01839 615 Gene3D - 1 74 IPR036431 GO:0003677
Spst4g01839 615 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 611 - -
Spst4g01839 615 MobiDBLite consensus disorder prediction 362 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01839 Spst-Chr4 58740659 58743953 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Spst4g01839 ARID 9.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01839 - - pvu:PHAVU_010G100300g 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g01093 1 13349632 13352902 Spst4g01839 4 58740659 58743953 PCT