Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01832 ATGGCTGTCGTGAGTTCTATGCCTGCAACTCCACCACAGGTCAATCCTATGAACACGCTTCGTGATATTGGGGTTCCTGGAATCATGACTAGTAGGAGAGAAATTGTAAGTGAGCCTAGTCCAAGTATGGTTAATGATACAATCTATGTTGCTGTGCCAAAAGATGTGAAAGATGGCAAATTAAATCTCATATGGGCAATACAAAATTCTGGAGGAAAGAGAATTTGCATCCTTCATGTTCACGTGCCAGCACCCATGATCCCTTTGATGGGTGCTAAATTTCGTGCAAATGCACTGAGAGAGGAGGAAGTTCATGATTACCATGAAAGAGAAAGGCAAAAAATGCACAAGACTTTGGAAGCCTATCTACTTATCTGTCAAAGAATGGGGGTGCGGGCAGGGAAACTACACATTGAAATGGATTGTGTAGAAAAAGGGATTGTACAACTCATCTCCCAGTATGGCATAAAGACGCTTGTAATGGGAGCAGCATGTGATAAGTACCATTCTAAGAGAATGGTATCCCTCAGATCTAAGAAAGCTATATATGTATGTGAACAAGCTCTGCCTTCTTGTCATATAAAGTTTATCTGCAACGGGTACCTCATACACACAAGTGCTATATCAATCAGGGATAGCAATTTGGATAGAGGAAATGTTGAGGTCATATCTCCTTCCGTGCAGCAAATAGCAAACTCTGAAGTTGGGCATTCACCTAACATGATATCCTCATCTGTAGGGCAAGGGAAAAATTATTGGACAAAACTACCTAATTCAGAGCAAGAGTTTTTTCGTAGAGTGAGGACTATCAGTGATGGACAAATGAGTCGCATTGGATCTGTTTCTTCTTCAGAAGGGTACTTAACTCCTCAGAGGAAGTTCGGGAAAGAATTAAGTTGTGAGGAGTTAGATGGGCAGTCTCGAAGGAGTTCTTCAGTTTTCTCAATGTGCTTTAACAGTTGTTCAGTTGATGCAGAATTGATCCCTAATTTGATGAATGATGGCAGTGGGAATGTATTAGACTTGACGTTGAATGAATTTTCTCTGAATAACAAGGATGTTCATCATTCACCATCTTCAAGTGTAGTGGATGGAGGAAGGGATGATGCTCTCTATGATCAACTTGAACAGGCAATGGCTGAGACTGCGGATGCTAGGCATGATGCATACCAAGCAACTCTTAGGCGTGTGAAAGCAGAAAGAGAAGCCATTGATGCTATACGCAAAGCTAAAGCTACTGAAAACTTGTATCAAGAAGAGCTAAAACTAAGAAAAGAACAAGAGGAAGCAGTGCAGAATGCAAATCAAGAACTTGATAATATGAAGAGCCAAATAAACAAAGTTAATGAAGAACTTCGACTTGCCTTAAATCAGAAATTATGTCTAGAGAATCAAATTGCATCAACTGAACTCATTATAAAGGAGTTGAAGCAGAAGATTATATCTGCTGATGACCTGTCACAAAACTACAAGCATGAACTAGATGATTTGCAAATGCAGCTTGGTAACGCATTGGTTGAGGCTGAGGAGTTGAAGAAAAAACAAGGGGAAGCATCAAGAATGCAGGAGCTCCAACGCTTCTCAGAATTCTCCTTTTCAGAGATTAAAGAAGCAACAAGTAACTTCAATGCATCCCTGAAGATTGGACAGGGTGGGTATGGAAGTATATTTAAAGGTATCTTACGTCACACTGAGGTGGCTATAAAAATATTGAGTCCTGACAGCACCCAAGGCCCAGAGGAGTTTCAACAGGAGGTTGATATATTGAGCAAGTTAAGGCACCCCAATCTTGTGACACTTATAGGGTCCTGCCCAGAATACTGGTCTCTTGTCTACGAGTATTTACCCAATGGAAGCCTTGAAGATCGTCTGAACTGCAAGGATAACACACCTCCATTATCATGGCAAACTCGAATTCGCATTGCTGCAGAACTCTGCTCTGCTCTAATTTTTCTTCACTCAAGTAAACCTCACAGCATAGCACATGGTGACTTAAAACCTGGCAACATTCTCCTTGATGCAAACCTTGTATGCAAGCTGAGTGACTTTGGAATCTGCCGTATATTATCTTGTCAAGAGGGTTCAAGTAACAGCACTACACAGTTTTGGAGAACTGTTCCAAAGGGAACTTTTGTGTATGTGGATCCCGAATTCATTGTTTGTGGTGAAATCACACCAAAGTCAGATGTTTATTCATTTGGAATCATTCTATTGAGATTGATCACTGGGAAACCTGCTCTTAAAATAACAAAGGAAGTGCAAAAGGCATTAAATGGTGGAAAGTTGAAATCCATCTTGGATCCTTCGGCTGGAGACTGGCCAATTATGGTTGCTGAAGAGTTGGTCCGGTTGGCTTTGAGGTGTTGTGAGATGAATAGAAAGAGCAGACCTAACCTTCATCCAGATGTTTGGAGAATACTGGAACCAATGAGGGCTTCTTGTGGTGCCACCAACACCTTTCAACTGGGTTCTAAAGGACAATGCCAACCTCCTCCATATTTCATTTGTCCAATCTCTCTGAAAGTGATGGAAGATCCACAAGTGGCTGGAGATGGTTTTACTTACGAAGGTGGAGCAATAAGAGAATGGCTGAAAAATGGTCGTGAAAATTCACCAAGAACAAACTCTAAGCTTCCACATCACAACCTTATTCCCAACCACTCTCTTCGCCATGCAATCCACGACTGGCTTCAAACTCACTGA 2703 0.414 MAVVSSMPATPPQVNPMNTLRDIGVPGIMTSRREIVSEPSPSMVNDTIYVAVPKDVKDGKLNLIWAIQNSGGKRICILHVHVPAPMIPLMGAKFRANALREEEVHDYHERERQKMHKTLEAYLLICQRMGVRAGKLHIEMDCVEKGIVQLISQYGIKTLVMGAACDKYHSKRMVSLRSKKAIYVCEQALPSCHIKFICNGYLIHTSAISIRDSNLDRGNVEVISPSVQQIANSEVGHSPNMISSSVGQGKNYWTKLPNSEQEFFRRVRTISDGQMSRIGSVSSSEGYLTPQRKFGKELSCEELDGQSRRSSSVFSMCFNSCSVDAELIPNLMNDGSGNVLDLTLNEFSLNNKDVHHSPSSSVVDGGRDDALYDQLEQAMAETADARHDAYQATLRRVKAEREAIDAIRKAKATENLYQEELKLRKEQEEAVQNANQELDNMKSQINKVNEELRLALNQKLCLENQIASTELIIKELKQKIISADDLSQNYKHELDDLQMQLGNALVEAEELKKKQGEASRMQELQRFSEFSFSEIKEATSNFNASLKIGQGGYGSIFKGILRHTEVAIKILSPDSTQGPEEFQQEVDILSKLRHPNLVTLIGSCPEYWSLVYEYLPNGSLEDRLNCKDNTPPLSWQTRIRIAAELCSALIFLHSSKPHSIAHGDLKPGNILLDANLVCKLSDFGICRILSCQEGSSNSTTQFWRTVPKGTFVYVDPEFIVCGEITPKSDVYSFGIILLRLITGKPALKITKEVQKALNGGKLKSILDPSAGDWPIMVAEELVRLALRCCEMNRKSRPNLHPDVWRILEPMRASCGATNTFQLGSKGQCQPPPYFICPISLKVMEDPQVAGDGFTYEGGAIREWLKNGRENSPRTNSKLPHHNLIPNHSLRHAIHDWLQTH 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01832 900 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
Spst4g01832 900 ProSitePatterns Protein kinases ATP-binding region signature. 548 569 IPR017441 GO:0005524
Spst4g01832 900 SMART Ubox_2 833 896 IPR003613 GO:0004842|GO:0016567
Spst4g01832 900 SUPERFAMILY Protein kinase-like (PK-like) 522 800 IPR011009 -
Spst4g01832 900 SUPERFAMILY RING/U-box 827 900 - -
Spst4g01832 900 Gene3D Transferase(Phosphotransferase) domain 1 615 821 - -
Spst4g01832 900 CDD RING-Ubox_WDSUB1-like 831 886 - -
Spst4g01832 900 FunFam receptor-like protein kinase FERONIA 506 614 - -
Spst4g01832 900 ProSiteProfiles U-box domain profile. 829 900 IPR003613 GO:0004842|GO:0016567
Spst4g01832 900 Pfam U-box domain 831 900 IPR003613 GO:0004842|GO:0016567
Spst4g01832 900 PANTHER OS02G0152300 PROTEIN 48 894 - -
Spst4g01832 900 Gene3D Phosphorylase Kinase; domain 1 511 614 - -
Spst4g01832 900 Coils Coil 380 400 - -
Spst4g01832 900 Coils Coil 409 514 - -
Spst4g01832 900 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 829 900 IPR013083 -
Spst4g01832 900 ProSiteProfiles Protein kinase domain profile. 542 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01832 900 CDD STK_N 47 200 - -
Spst4g01832 900 Pfam Protein kinase domain 545 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst4g01832 900 SMART serkin_6 542 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01832 Spst-Chr4 58601017 58605912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01832 1 900 U-box Gene Family AT2G45910 48.835 0.0 815
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Spst4g01832 Pkinase 4.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01832 - - var:108321203 1375.15