Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01806 ATGGCCTTCCCTCCCTCTCACTCCTTCATCTTCCAAACCCATGAAGATCATGACCACCACCAACAACTCCATCTACGCTCTAACTCTTCCTCCCTCAACGCCTTCCCTTCTTTCCCACCCCATCACTTTCAAGGTGGTGGTGCAGGTGCAGGTTTCATGATGAAGCGATCGATGTCGTTTTCAGGCATAGAGAACAAGTGCGATGAAGTGCATGGAGACGACGATTTGTCAGATGATGGATCTCAGCTAGGGGAGAAGAAGAAGAGGCTGAATTTGGAGCAGGTGAAGGCACTTGAGAAGAGTTTTGAGTTGGGGAACAAGCTTGAGCCTGAGAGAAAAATGCAGCTTGCCAAGGCTTTGGGACTTCAACCAAGGCAAATCGCTATATGGTTCCAGAATAGGAGAGCAAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAATTCTTAAGAAGCAGTTTGAAGCTGTGAAAGTTGATAATGACTCCCTCAAGGCTCAGAATCAGAAACTACACGCAGAGGTAATTATATGCAGCTTTTCTAACATGAACAAACAGTTTTGGTTTTACACTTTTACTGTGTGGCGTTTGCAGCTACAAACTCTGAAAAATAGGGACAGCTGTGAAACCGGAACAGTTAGCCTCAAGAAAGAAAATGAGGGTTCTTGGAGCAATGGAAGCAACAACAGTTCAGAAATCAACTTGGATCTCTCAAGAACACCAGTTATGAACAGTCCTGTATCTTCTCAGAATGGAAAAAGCCTTCTACCAACTTCCCATAAGCCAACAAGCATAACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGTTTCTGCAACATGTTCCACAACATCGATGAGCAGCATAATTTTTGGTCCTGGCCTGAGCAGCAGCACCAGTTTCATTAA 921 0.4484 MAFPPSHSFIFQTHEDHDHHQQLHLRSNSSSLNAFPSFPPHHFQGGGAGAGFMMKRSMSFSGIENKCDEVHGDDDLSDDGSQLGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLEKEYEILKKQFEAVKVDNDSLKAQNQKLHAEVIICSFSNMNKQFWFYTFTVWRLQLQTLKNRDSCETGTVSLKKENEGSWSNGSNNSSEINLDLSRTPVMNSPVSSQNGKSLLPTSHKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQHNFWSWPEQQHQFH 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01806 306 CDD homeodomain 86 142 IPR001356 GO:0003677
Spst4g01806 306 Coils Coil 133 174 - -
Spst4g01806 306 Gene3D - 78 156 - -
Spst4g01806 306 PRINTS Lambda-repressor HTH signature 112 121 IPR000047 GO:0003677
Spst4g01806 306 PRINTS Lambda-repressor HTH signature 121 137 IPR000047 GO:0003677
Spst4g01806 306 SUPERFAMILY Homeodomain-like 76 143 IPR009057 -
Spst4g01806 306 Pfam Homeobox associated leucine zipper 141 175 IPR003106 GO:0006355|GO:0043565
Spst4g01806 306 ProSiteProfiles 'Homeobox' domain profile. 81 141 IPR001356 GO:0003677
Spst4g01806 306 Pfam Homeodomain 86 139 IPR001356 GO:0003677
Spst4g01806 306 ProSitePatterns 'Homeobox' domain signature. 116 139 IPR017970 GO:0000981|GO:0006355
Spst4g01806 306 SMART HOX_1 84 145 IPR001356 GO:0003677
Spst4g01806 306 FunFam Homeobox-leucine zipper protein ATHB-13 78 145 - -
Spst4g01806 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 297 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01806 Spst-Chr4 58197902 58200444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01806 1 300 Homeobox Transcription Factor Family AT5G15150 47.416 5.45e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g01806 Homeodomain 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01806 K09338 - gmx:100790803 431.795