Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01802 ATGGGAAGGAAACCCTGTTGTGACAAGATGGGTTTGAAGAAGGGTCCTTGGACTGCTGAAGAGGATGAGATTCTTGTCAATTATATCAACAAGAATGGTGGCCATGGAAGTTGGCGTTCTCTTCCCAAGTTAGCAGGTCTTCTTCGTTGTGGTAAGAGTTGTAGGCTAAGATGGACCAACTACCTCAGACCAGATATTAAACGTGGTTCCTTTACTCTTGAGGAAGAAAAACTAATCATGCAGCTTCATGGTATCCTTGGAAATAGGTGGGCTGCTATAGCCTCTCAGCTACCAGGAAGAACAGACAATGAGATCAAGAACTTATGGAACACCCACTTGAAGAAACGTCTCATTTGCATGGGCCTTGACCCTCAAACCCACCAGCCACTGTCCTCTTCACGCAACCCTAATGACAAGGCCCATGCAGCATCCAGCTCAACCCGCCACATGGCCCAGTGGGAGAGTGCTAGGCTTGAAGCAGAGGCCAGGCTCTCAAGGGATCCCCATTTGTTCAACAACACCAACAAAACTGACTCTGACTACTTCCTCCGAATGTGGAACTCTGAAGTTGGACAATCCTTTCGTGATGTGCACAAATCAGACAACAAAGGTAGCTGCCAAAGTCCCATTTCTCTAGGGTCATTGTCTGCTACTACCACCACATATTTCGCTTCCAACCCTGCAAACGTTGTTGCGAAAGAGGATTTGGTGTGGGGTGGTAGCAAGAAAATTGCCTCAGATTCATCCAGCTCTAGTGAACTAGAAGAAGACTCGTGTGACACTTCATTGCAGCTCTTGTTAGATTTCCCTATAAACAATGACATGAGCTTCTTAGAATGA 840 0.4643 MGRKPCCDKMGLKKGPWTAEEDEILVNYINKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGSFTLEEEKLIMQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLICMGLDPQTHQPLSSSRNPNDKAHAASSSTRHMAQWESARLEAEARLSRDPHLFNNTNKTDSDYFLRMWNSEVGQSFRDVHKSDNKGSCQSPISLGSLSATTTTYFASNPANVVAKEDLVWGGSKKIASDSSSSSELEEDSCDTSLQLLLDFPINNDMSFLE 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01802 279 FunFam Myb transcription factor 11 68 - -
Spst4g01802 279 MobiDBLite consensus disorder prediction 125 148 - -
Spst4g01802 279 Gene3D - 11 68 - -
Spst4g01802 279 Gene3D - 70 117 - -
Spst4g01802 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 242 - -
Spst4g01802 279 SUPERFAMILY Homeodomain-like 10 109 IPR009057 -
Spst4g01802 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Spst4g01802 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Spst4g01802 279 CDD SANT 16 62 IPR001005 -
Spst4g01802 279 FunFam MYB transcription factor 70 117 - -
Spst4g01802 279 CDD SANT 70 113 IPR001005 -
Spst4g01802 279 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Spst4g01802 279 SMART sant 13 64 IPR001005 -
Spst4g01802 279 SMART sant 67 115 IPR001005 -
Spst4g01802 279 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Spst4g01802 279 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Spst4g01802 279 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01802 Spst-Chr4 58134555 58137146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01802 1 279 MYB Transcription Factor Family AT3G61250 60.825 2.93e-120 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst4g01802 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01802 K09422 - gmx:100788528 459.529