Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01797 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCATGCGACAAGACTGTCTATGTGGTTGACTTGTTAACTCTTGAAGGCACTCCTTACCATAAAAATTGCTTCAAATGCAGTCACTGCAAAGGATATCTTACGATGTGCACATACTCCTCAATGGATGGAGTTCTCTATTGCAAGCCACACTTTGAACAACTCTTCAAGGAATCTGGCAACTTCAGCAAGAACTTTGCAAAGTCTACTGAGAAACAAAATGACATAAATAGGACCCCCAGCAAGCTATCTTCCATGTTCAGTGGAACCCTGGACAAATGTGCAGTTTGCACAAAAACAGTCTATCCTCTGGAAAAGGTGACACTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCTGGGTGCCCTCTGACACATTCAAACTATGCTGCCCTTGATGGAGTCCTCTACTGCAGGGTCCACTTTCAACAACTCTTCATGGAGAAAGGGAACTACAGCCATGTGCTCCAAGCTGCTGCACACAAGAGGACAGGTTCCTCTACACCTCCCGAGCCTCTATTTGAGGAGCCATCACATCCACCACCAGCATCTGAGGAACCTAAAGTAGAAGAAGAAGAAAAAGAAGAAGAAGAAGAAGAAAAGGAAAAGGAAAAGGAAAAGGAAAAAGAAGAAGAAGAAGAAGAAACCTCTTGA 696 0.4382 MSFTGTLDKCKACDKTVYVVDLLTLEGTPYHKNCFKCSHCKGYLTMCTYSSMDGVLYCKPHFEQLFKESGNFSKNFAKSTEKQNDINRTPSKLSSMFSGTLDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFQQLFMEKGNYSHVLQAAAHKRTGSSTPPEPLFEEPSHPPPASEEPKVEEEEKEEEEEEKEKEKEKEKEEEEEETS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Spst4g01797 231 Coils Coil 200 231 - -
Spst4g01797 231 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Spst4g01797 231 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Spst4g01797 231 SMART lim_4 9 61 IPR001781 -
Spst4g01797 231 SMART lim_4 103 155 IPR001781 -
Spst4g01797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Spst4g01797 231 Gene3D Cysteine Rich Protein 101 168 - -
Spst4g01797 231 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Spst4g01797 231 MobiDBLite consensus disorder prediction 174 231 - -
Spst4g01797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Spst4g01797 231 Gene3D Cysteine Rich Protein 5 100 - -
Spst4g01797 231 Pfam LIM domain 10 65 IPR001781 -
Spst4g01797 231 Pfam LIM domain 104 159 IPR001781 -
Spst4g01797 231 FunFam LIM domain and actin-binding 1 4 74 - -
Spst4g01797 231 FunFam LIM domain and actin-binding 1 98 168 - -
Spst4g01797 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Spst4g01797 231 PANTHER OS06G0237300 PROTEIN 6 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01797 Spst-Chr4 58105656 58107284 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Spst4g01797 LIM 1.1e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01797 - K09377 gmx:100305845 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01797 4 58105656 58107284 Spst4g01797 4 58105656 58107284 ECH