Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01780 ATGGAAGCAGCAACGGCAGCAACCCCTTCTCAGAGAAAGCTGAAGCGGAAACGAACCCTGGCACAAAGCGATCCTGAACTCGACCGTCTCAACTCACTTCCGTGGAACTCCTCTCTTCCTCAAAATGACGACGATGACGTTTTCTCTATGTTCATTGGCTCCAACGAACTCGAAGGAGGTTTTCTTTCCCTTGAGGAGATTGATGAGGCTGAGTATGGTTTGAATATTCCTGAACCTGAAGATGGAAAGAGGAAGACGAAGAAGAAGAAGTCTGTACAGAATGAAGATGGAAAGAAACAGCAGAAGGACGGAGTTGATGGTGGTTGTAGTGACGAGGTCGAAGCTGAGTTGGACGAGAGTGTGAAGGCGAAAGAGAAGAATAAGAAGAAGAAGAAGAAGAAGAAGAAGGCGAAAAAGAAGGATGCCACGGAAGACCAGAAAGTTGAGCAGCTAGATGTTGGTTTAGATGCTAATGTGAAAGATGGTATAAGTGAAGAGGACAATGATGAAACTGATTTTTTTGCATGGAATGAGTTGAGGCTTCATCCTCTCCTAATGAAAGCAATATGTAAACTTGGCTTCAAGGAACCAACACCGATACAGAAGGCTTGCATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTGCAGAGACAGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAGCGCATTTTGGAGGAGAGAGACAAGGATGCAAACATGGTTGAAGAACCTGAAAAGTATTCTTGTAAAGGCCTTTTGAGGGCTCTTATTATTGCTCCGACTAGAGAACTTGCACTTCAGGTCACTGATCATCTGAAATCAGTTGGCAAATATATTAATGTTAGGGTGACCCCTATAGTTGGGGGCATTTTAGCTGAAAAGCAGGAGAGACTTTTAAAAGCAAAGCCTGAGATTGTTGTTGGCACTCCGGGACGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGTTACATTCACTCTCTTTCTTTGTCCTTGATGAGGCTGATCGGATGGTGCAAAATGGTCACTTTAAGGAGTTGCAGTCTATAATTGATATGCTTCCCATGTCCAATATCTCCACTGAAGATAATTCTCAAAATGTACAAAGTTGTGTTACAGTTTCTAGTTACCAAAGAAAGAAAAGGCAAACACTTGTTTTTTCCGCAACTGTTGCTCTGTCTGCTGATTTTCGCAAGAAGCTAAAACGGGGATCAATTCAACAAAAACAATCATTGACAGATGGATTGAATTCTATTGAAACTCTTTCTGAGCGTGCAGGAATGAGATCCAATGCAGCAATTATTGATCTTACTAATCCGTCTATATTAGCAGCTAAGCTTGAGGAGTCATTTATTGAATGCAGAGAAGAAGATAAAGATGCGTATTTGTATTATATTTTGACTGTCCATGGGCAAGGTCGCACAATAGTTTTCTGCACATCAATTGCAGCTTTACGTCATATTTCTTCCATACTGCGCATTCTTGGAATCGATGTTTGGACTCTTCATGCTCAAATGCAGCAGCGAGCACGATTAAAGGCCATTGATCGCTTTCGAGAAAATGAAAATGGCATACTTGTTGCTACAGATGTTGCTGCAAGGGGTCTTGATATTCCTGGTGTTAGAACTGTTGTCCACTATCAGCTTCCACATTCAGCAGAGGTTTATGTTCATAGAAGTGGAAGAACAGCCAGAGCCTCTGCTGAAGGTTGTAGTATTGCTTTAATATCACCGAGAGATACAACAAAGTTTGCTTCATTGTGCAAGTCATTTTCTAAGAACTCTTACTTGCCAGAGGTCCTAAAACGTTTGTCTCTTGCACGACAAATAGACAAGATAACAAGGAAGGATTCCCAGGAAAAGGCTGAGAAAAGCTGGTTTGATCGGAATGCTAGCTCAGTGGAATTAATTACTGAAAATTATGACAGTGAAGAGGAACAAGAGCTCAATATGCTGATTTCACGCCCATTACAATCAAAATCATTCTCACATCGGTATTTAGCAGGGGCTGGTGTCACACCCCTCATGCAGGAGCAATTGCAACAATTAGCAAGGCAAAAATTAAGTGATCACCAAGGAAAAAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTGGATGCACTTCAGGCACTTCGATGTGCTGGTGAAGAGGTGCGCATGGATATCAAGGATATGGCTGGAAAGCAGAGAATTGTGGAAAATTTAAAACGAAAGCGAAAAGAGGAGAAAAAACGTTTGCGTGATCAGCGTAGAAAGCAGAAGAAAAAGCTAAAATACGGGGATGAATAG 2322 0.4199 MEAATAATPSQRKLKRKRTLAQSDPELDRLNSLPWNSSLPQNDDDDVFSMFIGSNELEGGFLSLEEIDEAEYGLNIPEPEDGKRKTKKKKSVQNEDGKKQQKDGVDGGCSDEVEAELDESVKAKEKNKKKKKKKKKAKKKDATEDQKVEQLDVGLDANVKDGISEEDNDETDFFAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAAAHQGKDVVGAAETGSGKTLAFGLPILQRILEERDKDANMVEEPEKYSCKGLLRALIIAPTRELALQVTDHLKSVGKYINVRVTPIVGGILAEKQERLLKAKPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMSNISTEDNSQNVQSCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGSIQQKQSLTDGLNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAIDRFRENENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALISPRDTTKFASLCKSFSKNSYLPEVLKRLSLARQIDKITRKDSQEKAEKSWFDRNASSVELITENYDSEEEQELNMLISRPLQSKSFSHRYLAGAGVTPLMQEQLQQLARQKLSDHQGKKGKLVVIGQDCVDALQALRCAGEEVRMDIKDMAGKQRIVENLKRKRKEEKKRLRDQRRKQKKKLKYGDE 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01780 773 Gene3D - 119 416 IPR027417 -
Spst4g01780 773 Pfam DEAD/DEAH box helicase 198 402 IPR011545 GO:0003676|GO:0005524
Spst4g01780 773 Pfam Helicase conserved C-terminal domain 468 576 IPR001650 -
Spst4g01780 773 MobiDBLite consensus disorder prediction 25 44 - -
Spst4g01780 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 206 419 IPR014001 -
Spst4g01780 773 MobiDBLite consensus disorder prediction 72 110 - -
Spst4g01780 773 MobiDBLite consensus disorder prediction 745 773 - -
Spst4g01780 773 PANTHER RNA HELICASE 130 744 - -
Spst4g01780 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 456 617 IPR001650 -
Spst4g01780 773 MobiDBLite consensus disorder prediction 1 51 - -
Spst4g01780 773 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 341 349 IPR000629 -
Spst4g01780 773 SMART ultradead3 193 419 IPR014001 -
Spst4g01780 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 365 IPR027417 -
Spst4g01780 773 CDD SF2_C_DEAD 457 586 - -
Spst4g01780 773 SMART helicmild6 496 577 IPR001650 -
Spst4g01780 773 MobiDBLite consensus disorder prediction 751 765 - -
Spst4g01780 773 CDD DEADc_DDX24 185 446 - -
Spst4g01780 773 MobiDBLite consensus disorder prediction 76 110 - -
Spst4g01780 773 MobiDBLite consensus disorder prediction 123 146 - -
Spst4g01780 773 Coils Coil 114 146 - -
Spst4g01780 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 591 IPR027417 -
Spst4g01780 773 Coils Coil 736 767 - -
Spst4g01780 773 Gene3D - 454 676 IPR027417 -
Spst4g01780 773 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 174 202 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01780 Spst-Chr4 57881424 57892042 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01780 175 587 Eukaryotic Initiation Factors Gene Family AT5G11200 28.802 6.85e-41 154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01780 4 57881424 57892042 Spst4g01780 4 57881424 57892042 ECH