Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01778 ATGGCTTTCCCTCCTTACCGACGATCCCACTTGCGTAGCAACACTTACCATGCCCTTGTTCACCTCTTCTCTCGCTTCGCTGAGTTCAACTCTTCACATGAAACTCCAATTCAAACCCTCAACATTCCCGATAATGGCAGTGGTAGAATGGATCAAGTAAACAAAGAAAAGGAGCCTAGGTGCCCCAAAGTTGTTGATTCTGATATTTTGGATTCTATAAGCCAGAAGGATCCACAGGAGGTTCGAGAGACCATTGAGGGGGCTGAAGACAAGGATATGAATTTTACTTCCAACAAGATGGTCCTAGATGATATAGAACATATGATGGGAATAGAGGACATTTCTACCCAAGCAAATGGTTTTGGTATGGAGCAGGAGCTAATGAATGAGTTTGAGCTAGTTATGAAAGGAAATGAAGATCTAATTTGTGATAGTGGTTCAATCCCCTTGAACATGGGATTTGATGAGAAACATAATGATGGTTGTGAAGTTGGGTTGATAGATTCTCTAGTAGACATGGAAGAGGGAGAAATTTCTCGAGATTTGGGAATGGATGGCAATTCATTAGCTGTGTCTTCTGCGGATGCTTTAATTTTACATCAGATGGAAGCAGATGAGGTTCAGAAGCCTGTAAATGTAACTAGAAATATGATGATATATCCTTATATGATTAAGGATCAAGAAAAGGAAAAAGGACGTGAGTCTACTTCCTCTGTGGTAAGTTCACTTCAAGATACTAATGATAGTGGACAAGTGGACCCTAGAACTGGTGGCAACAAGGGAATTGCATGCCGAGATAAAGTAGCAATTTCTGAAGAAACTGATGAATGTAAGAAGGAAGATAAAACAAAGTTGGTAAATACCAGTAAAAGGAACAAGCGTGGTGGAAAGAAAGAAAAAAAGAAGATGGCGTGTAAAATGAAGAAAGCAGTAAAGAACAGAGAACTGGGTGTTAAAAGATTGCAGTTGCAGCCGTATATACAAAAACCAAAAGTTGTGTCACTTTGTCGCCATTATCTTGCGGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTTTCACATGATGCAGTGCCTCAAACAAAATCCAAGCCATGTAGTTATTTTGCTCATCACTCTTGCATGAAAGGGGGTGATTGCCCATTTGATCACCAGCTCTCAAAATATCCTTGTCACAATTTTGTGTCCCAAGGTTCTTGTAGAAGAGGTGAAGCTTGCTTGTTTTCACACCAGGCACCAACCAGAGAAGATATTCCTACCCCCGCAAATATGTTCAGACCAGAGTTGTCCACTCTTAAGTCAGGAAATGCAAATTCCAGTACACCACTTAACAATAATCACGGCTCTGGTTCTGTCCAGCAAAACCACTTTACTCATTCTTCAGGAATTCATTCTCGCATCAATGTTGAAAATAAGGTGACAAACACTGCACAGAAACAGTCTATACCACCTAAAGGAATTAGTTTCATCAATCTTGCAAAATTAACACCCAGCCCTTCTATACCAAAGCAAGGTACAGTAACAATCAAGGGAAGTCCTCTACAAACTGGGACCCTCAGAGATCAAAGTTCATTTGGTAAAGCTCAAAACAAGGTGGAGATTCCTAAGAAATTGTCAGCTGTGACACCCAAGGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTATGCGGCTTTAAAAGTCATATTCGCCCCAATGTGAGTACGGAAAATGGTTGCAAGTTGCCTCAGTTACTTAATTTTGGTTTGCCTGTGCAGGCAAATTCCTCTCTAAATAAGGATGAGTACAGCAAAGCTATTGACAGAACAAAACAAAGTGTATCACTGACTGATATATTCTTAACTGAGATTTTAGGGAAAAATCAATCCATGTCAGAAGGAATGAAATCAAAGTTTCCAGATAAAATATCAGATACACTAAGTCCGTTTGTTTCAAACCAATCTTCTGAACACGTAAAATCTGGTTATCATAAGCATGTATCAAACTCTGGTCAAAAGGCACTCTTGTCTACATTTGCATTTGCAGCAGAGCATGAATCTGACATTAACATAAAATACCCAACCGGTGATTCATCAGCATGA 2079 0.4002 MAFPPYRRSHLRSNTYHALVHLFSRFAEFNSSHETPIQTLNIPDNGSGRMDQVNKEKEPRCPKVVDSDILDSISQKDPQEVRETIEGAEDKDMNFTSNKMVLDDIEHMMGIEDISTQANGFGMEQELMNEFELVMKGNEDLICDSGSIPLNMGFDEKHNDGCEVGLIDSLVDMEEGEISRDLGMDGNSLAVSSADALILHQMEADEVQKPVNVTRNMMIYPYMIKDQEKEKGRESTSSVVSSLQDTNDSGQVDPRTGGNKGIACRDKVAISEETDECKKEDKTKLVNTSKRNKRGGKKEKKKMACKMKKAVKNRELGVKRLQLQPYIQKPKVVSLCRHYLAGRCHEGDKCQFSHDAVPQTKSKPCSYFAHHSCMKGGDCPFDHQLSKYPCHNFVSQGSCRRGEACLFSHQAPTREDIPTPANMFRPELSTLKSGNANSSTPLNNNHGSGSVQQNHFTHSSGIHSRINVENKVTNTAQKQSIPPKGISFINLAKLTPSPSIPKQGTVTIKGSPLQTGTLRDQSSFGKAQNKVEIPKKLSAVTPKGVNFLSFGKGSVCGFKSHIRPNVSTENGCKLPQLLNFGLPVQANSSLNKDEYSKAIDRTKQSVSLTDIFLTEILGKNQSMSEGMKSKFPDKISDTLSPFVSNQSSEHVKSGYHKHVSNSGQKALLSTFAFAAEHESDINIKYPTGDSSA 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01778 692 MobiDBLite consensus disorder prediction 279 303 - -
Spst4g01778 692 Pfam CCCH-type zinc finger 335 355 IPR041367 -
Spst4g01778 692 MobiDBLite consensus disorder prediction 502 527 - -
Spst4g01778 692 MobiDBLite consensus disorder prediction 228 263 - -
Spst4g01778 692 SUPERFAMILY CCCH zinc finger 388 415 IPR036855 GO:0046872
Spst4g01778 692 Gene3D - 360 421 - -
Spst4g01778 692 MobiDBLite consensus disorder prediction 236 254 - -
Spst4g01778 692 ProSiteProfiles Zinc finger C3H1-type profile. 384 412 IPR000571 GO:0046872
Spst4g01778 692 Gene3D - 283 359 - -
Spst4g01778 692 MobiDBLite consensus disorder prediction 289 303 - -
Spst4g01778 692 ProSiteProfiles Zinc finger C3H1-type profile. 359 383 IPR000571 GO:0046872
Spst4g01778 692 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 77 684 IPR045124 GO:0003723|GO:0045892
Spst4g01778 692 SUPERFAMILY CCCH zinc finger 330 355 IPR036855 GO:0046872
Spst4g01778 692 ProSiteProfiles Zinc finger C3H1-type profile. 330 357 IPR000571 GO:0046872
Spst4g01778 692 MobiDBLite consensus disorder prediction 427 456 - -
Spst4g01778 692 SMART c3hfinal6 359 385 IPR000571 GO:0046872
Spst4g01778 692 SMART c3hfinal6 387 411 IPR000571 GO:0046872
Spst4g01778 692 SMART c3hfinal6 329 356 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01778 Spst-Chr4 57860451 57864727 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst4g01778 zf-CCCH_4 8.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01778 - - vun:114165961 961.829