Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01776 ATGAAGCATAATCAGAAGAAGAATTTGAAGTTTGACGATGATCAAGGTTCAACGTCTAACATTGGGACGTTGTTGGATTTTATGAAAATCCAAAACAGAGGTGATATGATTCGAGAAAATGCGGTTGATTCATCTGTTTCATACTCTAAAGGTGGAGATGCGAAGAATTCTGAGTCAAAAGCAAATATTTTTGCTTGTAAATATTGTAAGAAAGAGTTTTCTACCTCACAAGCTCTGGGAGGACATCAAAACGCACACAAGCAAGAACGTGCTTTTGCAAAACATCGTCAAAGTTGTGATGTTAATGGGTTAGGACACTTTTCTTATTATTCTTCCTATCCAAGTTTTTATAACTTTCGTTCTTTTTATGGCGAGTCCTTCAATAGGACACTTGGGATTCGAAGTGAGTCTATGATCCACAAACTTTCTTGGAATTCAAGATACGGACATTCGTGGTTGAAAAGAGATCGTGACACGTCGAATTCATCAACATTTGATGAGGTTAGAATCATGAGACGGGATTATCCAACTATGAAGAGCTACGCAATTCCAAATTTGAAGGTAGAGGACAACAGTGATAAAACCAGTATTGAAACCCTCTCTCTTTTTCCGACTGTTCCTAGTAATTCATCAAGCCATCTTCACAACATGTCAATACTCGCCACAACAAGAATTATTGACGATTCTGTTGCAAAAGAAAGTTCAAGTGAAGCACCTTGCAATCTTAATCTGACACTTAAGATTTAA 747 0.3708 MKHNQKKNLKFDDDQGSTSNIGTLLDFMKIQNRGDMIRENAVDSSVSYSKGGDAKNSESKANIFACKYCKKEFSTSQALGGHQNAHKQERAFAKHRQSCDVNGLGHFSYYSSYPSFYNFRSFYGESFNRTLGIRSESMIHKLSWNSRYGHSWLKRDRDTSNSSTFDEVRIMRRDYPTMKSYAIPNLKVEDNSDKTSIETLSLFPTVPSNSSSHLHNMSILATTRIIDDSVAKESSSEAPCNLNLTLKI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01776 248 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Spst4g01776 248 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Spst4g01776 248 Gene3D Classic Zinc Finger 46 103 - -
Spst4g01776 248 SUPERFAMILY beta-beta-alpha zinc fingers 62 92 IPR036236 -
Spst4g01776 248 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 13 184 IPR044246 GO:0009788
Spst4g01776 248 Pfam C2H2-type zinc finger 64 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01776 Spst-Chr4 57843340 57844086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01776 58 114 C2H2 Transcription Factor Family AT5G01860 64.912 1.30e-19 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst4g01776 zf-C2H2_6 1.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01776 - - pvu:PHAVU_009G043700g 224.557