Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01765 ATGAGTTTTGGGGGTTTTCTTGACGACAAATCAGGTAGTAACGTTTCAGATATTCCTTACAAAAACGTTACCGCTACCAACCCCCACAACAACAATAGAATGCCCTTTGGTGCAATCTCTCAGCCACGTCTCGTGACCACCACTCCCACTTTGGCCAAATCCATGTTCAACTCCCCGGGACTATCTCTGGCACTTCAAACCAATCTAGATGGACAAGAAGATGCGAATAGAATGTTCGAAGAACCAAACGGTCTGAGAAGAAGCAGAGAAGAAGAGCATGAAAGCAGATCTGGCAGCGACAACATGGATGGTGCTTCCGGGGATGAACACGATGCAGATGACAAACCTCCAAAGAAAAAACGCTATCACCGACACACCCCTCAGCAGATACAAGAACTTGAAGCGTTGTTCAAGGAATGTCCTCATCCAGATGAGAAGCAAAGACTCGAACTTAGCAAGAGGCTATGCTTGGAAACCCGACAGGTGAAGTTTTGGTTCCAAAACAGGAGAACCCAAATGAAGACCCAGTTGGAGCGGCACGAGAACACTTTGCTGAGGCAAGAAAACGACAAGTTGAGAGCGGAGAACATGTCCATCAGGGAGGCAATGAGGAACCCCATGTGCTCCAATTGCGGTGGTCCTGCCATCATCGGCGAGATTTCGCTGGAGGAACAGCACCTTAGGATTGAGAATGCGCGATTGAAGGACGAGCTCGATCGGGTGTGTGCTCTCACAGGCAAGTTTCTGGGTCGTCCGGTTTCTTCATTACCGAATTCAAGTTTGGAGCTTGGCGTTGGGGGAAACGGGTTTGGTGGAATGAGCATCAGCACTACATTGCCTTTGGGACAAGATTTTGGAATGGGAATGTCTATGTCTGTGTCTAACAACCCCTTGGCTATGGTGTCCCCGTCGAGTACTAGACCAACTACTGTTGTGGGTGGGTTTGATAAATCCATCGAGAGGTCTATGTTTCTTGAGCTTGCTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCACAAACTGGGGAGCCTCTTTGGGTGAGAAATGTTGAAGGGGGGAGGGAAATTTTGAACCATGAGGAGTATGTGAGGACTTTCACTCCTTGCATTGGTTTGAGACCCAATGGGTTTGTGTCTGAAGCCTCTAGGGAAAATGGAATGGTCATCATTAACAGTTTGGCACTTGTTGAGACTCTCATGGACGCGAATAGATGGGCAGAGATGTTTCCTTGTATCATTGCAAGAACCTCAACAACTGAAGTGATATCTAATGGAATAAATGGAACAAGAAATGGAGCACTTCAATTAATGCATGCTGAACTTCAAGTTCTTTCTCCCTTGGTTCCTGTTCGCGAGGTCAATTTCCTTCGATTTTGCAAGCAGCACGCAGAAGGGGTTTGGGCAGTGGTGGATGTGTCCATTGATAGCATCAGAGAAGGTTCAGGAGCACCACCCACGTTTGTGAACTGTAGGAGGCTTCCTTCTGGTTGTGTTCTGCAAGACATGCCCAATGGTTACTCCAAGGTGACATGGGTGGAGCATGCAGAATACGATGAGAACCAAGTTCACCAGGTTTATAGACCATTGTTGAGCTCAGGCATGGGTTTCGGTGCTCAACGATGGGTGGCTACCCTTCAACGCCAAAGCGAGTGTCTAGCGATCTTAATGTCCTCAGCAGCACCATCTCGAGACCATTCAGCAATAACGGCTGGGGGAAGACGGAGCATGGTGAAGCTGGCGCAGCGAATGACCAACAACTTCTGCGCCGGTGTGTGCGCCTCCACGGTGCACAAGTGGAACAAGCTCAACGCCGGGAACGTGGACGAGGACGTGAGGGTGATGACGCGGAAGAGCGTGGACGATCCCGGCGAGCCGCCAGGGATCGTGCTGAGCGCCGCCACCTCCGTCTGGCTCCCGGTGTCGCCGCAGAGGCTCTTCGACTTCCTCCGCGACGAGCGCCTCCGAAGCGAGTGGGACATACTCTCCAACGGTGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAAGACCACGGCAACTGCGTATCTCTCCTACGAGCCAGTGCGATAAACTCCAACCAGAGTAGCATGCTGATACTGCAGGAGACATGCATAGACGCGGCGGGGTCGCTTGTGGTGTACGCGCCGGTGGATATCCCGGCCATGCACGTGGTTATGAACGGTGGTGATTCGGCTTACGTGGCTTTGTTGCCTTCAGGATTTGCGATTGTTCCCGATGGGCCCGGGTCTCGTGGGCAGCAGAATGGGCTGACTGCCACAACAAACGGCAGTGAAAACGGCGGGGCACGTGTGAGTGGGTCCCTCCTAACAGTGGCGTTTCAGATCCTTGTGAATAGTCTTCCTACAGCCAAGCTCACCGTAGAGTCGGTGGAAACCGTGAACAACCTCATATCATGCACCGTTCAGAAGATCAAAGCCGCGCTCCACTGCGAAAGTTAA 2463 0.516 MSFGGFLDDKSGSNVSDIPYKNVTATNPHNNNRMPFGAISQPRLVTTTPTLAKSMFNSPGLSLALQTNLDGQEDANRMFEEPNGLRRSREEEHESRSGSDNMDGASGDEHDADDKPPKKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIREAMRNPMCSNCGGPAIIGEISLEEQHLRIENARLKDELDRVCALTGKFLGRPVSSLPNSSLELGVGGNGFGGMSISTTLPLGQDFGMGMSMSVSNNPLAMVSPSSTRPTTVVGGFDKSIERSMFLELALAAMDELVKMAQTGEPLWVRNVEGGREILNHEEYVRTFTPCIGLRPNGFVSEASRENGMVIINSLALVETLMDANRWAEMFPCIIARTSTTEVISNGINGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDSIREGSGAPPTFVNCRRLPSGCVLQDMPNGYSKVTWVEHAEYDENQVHQVYRPLLSSGMGFGAQRWVATLQRQSECLAILMSSAAPSRDHSAITAGGRRSMVKLAQRMTNNFCAGVCASTVHKWNKLNAGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGQQNGLTATTNGSENGGARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALHCES 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01765 820 MobiDBLite consensus disorder prediction 1 37 - -
Spst4g01765 820 Coils Coil 170 205 - -
Spst4g01765 820 ProSitePatterns 'Homeobox' domain signature. 151 174 IPR017970 GO:0000981|GO:0006355
Spst4g01765 820 SMART HOX_1 117 180 IPR001356 GO:0003677
Spst4g01765 820 MobiDBLite consensus disorder prediction 79 126 - -
Spst4g01765 820 Gene3D - 394 549 IPR023393 -
Spst4g01765 820 FunFam Homeobox-leucine zipper protein HDG1 106 192 - -
Spst4g01765 820 MobiDBLite consensus disorder prediction 15 37 - -
Spst4g01765 820 MobiDBLite consensus disorder prediction 79 118 - -
Spst4g01765 820 SMART START_1 326 551 IPR002913 GO:0008289
Spst4g01765 820 Pfam START domain 326 550 IPR002913 GO:0008289
Spst4g01765 820 FunFam Homeobox-leucine zipper protein GLABRA 2 326 550 - -
Spst4g01765 820 Pfam Homeodomain 119 174 IPR001356 GO:0003677
Spst4g01765 820 ProSiteProfiles 'Homeobox' domain profile. 116 176 IPR001356 GO:0003677
Spst4g01765 820 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 115 817 IPR042160 -
Spst4g01765 820 SUPERFAMILY Bet v1-like 319 551 - -
Spst4g01765 820 SUPERFAMILY Homeodomain-like 102 176 IPR009057 -
Spst4g01765 820 SUPERFAMILY Bet v1-like 578 813 - -
Spst4g01765 820 CDD START_ArGLABRA2_like 321 550 - -
Spst4g01765 820 ProSiteProfiles START domain profile. 317 554 IPR002913 GO:0008289
Spst4g01765 820 Gene3D - 105 192 - -
Spst4g01765 820 CDD homeodomain 119 176 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01765 Spst-Chr4 57705005 57710370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01765 1 820 Homeobox Transcription Factor Family AT3G61150 66.707 0.0 1065
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Spst4g01765 START 1.6e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01765 K09338 - gmx:100811873 1464.51