Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01751 ATGGTGGAAGCTAGTAAAGATGTAGTAGCAGTTGATGCCTGTTCAACAGAAGACTGGTTGTTGCATGCACAGGAACTTGTTCCTGTGGTTCTTGCTAAGGCAAGAGAGGTAAAGGGGTTCCCGGGTAGGTGGAAGATGATCATTTCAAAATTGGAGCAGATTCCGTCCTGTTTATCGGATTTGTCTAGCCACCCTTGTTTCTCCAAGAATGCTCTTTGCAAGGAGCAATTGCAGGCTGTGTCAAAGACACTTAAAGAAGCCACGGAATTGGCTGAGTTGTGTGTGAAGGAAAAGTACGAGGGTAAGCTTCGGATGCAGAGTGATCTTGATGCATTAACGGGGAAATTGGATTTGAATTTGAAGGATTGTGGTCTCTTGATCAAGACCGGTGTGCTCGGTGAAGCTACTTTGCCGTTAACCGTGTTAGGTTCTATGGCAGAATCAGATATTGCAACACACAACAATATAAGAGAACTACTAGCGCGCCTTCAGATTGGTCACTTGGAAGCAAAGCACAAAGCGTTAGACAGGCTCTATGATGTTATGAAAGAGGATGAGAAGAATGTTTTGGCTGTTCTTGGCAGGAGCAATATTGCTGCTTTGGTTCAATTGCTCACAGCAACCTCTCCAAGGATAAGGGAGAAGACCGTTACTGTTATATGTTCTCTTGTGGAATTGGGGACCTGTGAAAAGTGGCTAGTTTCTGAAGGAGTTCTGCCACCTCTTATTAGACTTGTTGAATCTGGTAGTGCTGTCAGTAAAGAGAAGGCTACAGTATCTCTTCAGAGATTGTCAATGTCAGCAGAAACAACTCGTGCAATTGTTGGACACGGTGGTGTTCGGCCCTTGATTGAGCTTTGTCAAAATGGTGATTCTGTGTCACAGGCTGCTGCTGCCTGTACTTTGACAAATGTATCAGCTGTTCCTGAGGTGAGACAGGCTTTGGCTGAAGAAGGTATTGTGAGGGTTATGATCAATCTTCTTAATTGTGGAATTTTATTAGGTTCCAAAGAGTATGCTGCTGAGTGCTTGCAGAATCTCACTTCAAGTAATGAGCATTTAAGAAAGTCTGTTATATCAGAAGGTGGTGTCAGGAGTCTTCTGACCTATCTTGATGGTCCACTTCCCCAGGAATCTGCAGTTGGAGCATTGAGGAATCTGGTTGGATCAGTTTCTGAGGAAACTTTGGTTTCTCTTGGTTTGCTTCCCCGTTTGGTTCACGTTCTGAAGTTCGGATCTTTAGGTGCTCAACAAGCTGCAGCTTCTGTTATCTGTCGAGTTTGCAGCTCAATGGAGATGAAGAAAATGGTTGGTGAAGCTGGCAGCGTCCCTCTTCTCATAAAGATGCTTGAGGCCAAAGCTAATGCTGCTAGAGAGGTTGCTGCTCAAGCAATTTCAAGCCTGATGGTTCTGTCCCAGAATCGGAGAGAGGTTAAGAAAGATGATAAAAGTGTGCCAAATCTTGTCCAATTGCTTGATCCAAGCCCTCAGAACACTGCCAAAAAATATGCAGTTTCATGCCTTGGATCACTTTCCCCATGCAAGAAATGTAAGAAGCTAATGATTTCGTATGGAGCAATCGGGTATCTGAAGAAGCTTACAGAGATGGAGATTCCAGGAGCTAAAAAGCTACTCGAGAGGTTGGAAAGAGGGAAATTGAGAAGCTTGTTCAGCAGAAAGTAG 1683 0.4421 MVEASKDVVAVDACSTEDWLLHAQELVPVVLAKAREVKGFPGRWKMIISKLEQIPSCLSDLSSHPCFSKNALCKEQLQAVSKTLKEATELAELCVKEKYEGKLRMQSDLDALTGKLDLNLKDCGLLIKTGVLGEATLPLTVLGSMAESDIATHNNIRELLARLQIGHLEAKHKALDRLYDVMKEDEKNVLAVLGRSNIAALVQLLTATSPRIREKTVTVICSLVELGTCEKWLVSEGVLPPLIRLVESGSAVSKEKATVSLQRLSMSAETTRAIVGHGGVRPLIELCQNGDSVSQAAAACTLTNVSAVPEVRQALAEEGIVRVMINLLNCGILLGSKEYAAECLQNLTSSNEHLRKSVISEGGVRSLLTYLDGPLPQESAVGALRNLVGSVSEETLVSLGLLPRLVHVLKFGSLGAQQAAASVICRVCSSMEMKKMVGEAGSVPLLIKMLEAKANAAREVAAQAISSLMVLSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVSCLGSLSPCKKCKKLMISYGAIGYLKKLTEMEIPGAKKLLERLERGKLRSLFSRK 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01751 560 SMART arm_5 351 389 IPR000225 GO:0005515
Spst4g01751 560 SMART arm_5 308 349 IPR000225 GO:0005515
Spst4g01751 560 SMART arm_5 267 307 IPR000225 GO:0005515
Spst4g01751 560 SMART arm_5 390 429 IPR000225 GO:0005515
Spst4g01751 560 SMART arm_5 430 470 IPR000225 GO:0005515
Spst4g01751 560 SMART arm_5 185 225 IPR000225 GO:0005515
Spst4g01751 560 SMART arm_5 471 513 IPR000225 GO:0005515
Spst4g01751 560 Gene3D - 335 548 IPR011989 -
Spst4g01751 560 Gene3D - 151 334 IPR011989 -
Spst4g01751 560 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 237 279 IPR000225 GO:0005515
Spst4g01751 560 Pfam Armadillo/beta-catenin-like repeat 269 307 IPR000225 GO:0005515
Spst4g01751 560 SUPERFAMILY ARM repeat 155 518 IPR016024 -
Spst4g01751 560 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 16 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01751 Spst-Chr4 57524853 57526535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01751 206 479 U-box Gene Family AT3G54790 27.599 3.63e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01751 - - var:108346326 992.26