Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01750 ATGATTTTTTTCTCATTTTGTCCTGTAGCCACGTGGCCTCATCATTTGAAACGATCATTGCTTCATCCCATCTCACTCACTTCTCACTTTTCAACTTTCTCTCTCTGGTTTCGCAATTTTCCCCAATCTCAGCCTAGGGTTTTTTATCGCAAACACCCTCCTTCCTTCCTTCCCTGCCAGGTTGCGAGCAAAGGATTCCGAAGCTTCGACTCTGCTGGAAGAAAAATGAGACCTGTTTTCTGCGGAAACCTGGATTTCGACGCCCGACAATCTGATGTGGAGAGGCTCTTCAGAAGATACGGGAAAGTCGATAGAGTTGACATGAAATCTGGGTTTGCTTTCGTCTACATGGAAGATGAACGTGATGCTGAGTATGCAATCAGAAGACTTGATAGAACAGAATTTGGTAGAAAGGGACGGCGGATTCGTGTTGAGTGGACTAAGCAAGAACGTGACAGTAGAAGGTCAGGTGGTGATTCCAGAAAATCTTCATCTAATTCAAGACCATCCAAAACTTTGTTTGTTATAAATTTTGATCCAGTTCACGCCAGGACAAGGGATCTGGAGAGACATTTTGATCCTTATGGGAAAATATTAAATATAAGGATCAGAAGGAATTTTGCTTTTATTCAATATGAATCCCAGGAGGATGCTACTAGAGCTTTGGAGGCGACCAACTTGAGCAAGTTCATGGACCGTGTTATCACAGTGGAGTATGCCATAAGAGATGATGATGACAGGGATAAAAGGAACGGATACAGTCCTGAAAGAAGAGGTCATGACTCTCCTGATGGGAGATATGGTCGTGGTAGATCACCTAGTCCATATCGCAGAGGTAGGGGTAGCCCAGATTATGGTCATGGATCAAATCCAGCTTCCAGACCAGAAACAAAAGGTAGCCCCAAGTATGAACGAGCTGAAAGTCCGATAAATGGGAGATATGATAGCCGGTCTCCACCACCCCGAGATAGGTCACGCTCTTGA 984 0.4441 MIFFSFCPVATWPHHLKRSLLHPISLTSHFSTFSLWFRNFPQSQPRVFYRKHPPSFLPCQVASKGFRSFDSAGRKMRPVFCGNLDFDARQSDVERLFRRYGKVDRVDMKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGGDSRKSSSNSRPSKTLFVINFDPVHARTRDLERHFDPYGKILNIRIRRNFAFIQYESQEDATRALEATNLSKFMDRVITVEYAIRDDDDRDKRNGYSPERRGHDSPDGRYGRGRSPSPYRRGRGSPDYGHGSNPASRPETKGSPKYERAESPINGRYDSRSPPPRDRSRS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01750 327 MobiDBLite consensus disorder prediction 147 169 - -
Spst4g01750 327 MobiDBLite consensus disorder prediction 245 327 - -
Spst4g01750 327 FunFam serine/arginine-rich splicing factor RS41 isoform X2 163 294 - -
Spst4g01750 327 SMART rrm1_1 172 238 IPR000504 GO:0003723
Spst4g01750 327 SMART rrm1_1 78 145 IPR000504 GO:0003723
Spst4g01750 327 Gene3D - 161 290 IPR012677 -
Spst4g01750 327 CDD RRM1_AtRSp31_like 77 148 - -
Spst4g01750 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 149 IPR000504 GO:0003723
Spst4g01750 327 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 182 307 - -
Spst4g01750 327 FunFam Serine/arginine-rich splicing factor RS31 76 160 - -
Spst4g01750 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 138 IPR000504 GO:0003723
Spst4g01750 327 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 173 235 IPR000504 GO:0003723
Spst4g01750 327 Gene3D - 69 160 IPR012677 -
Spst4g01750 327 MobiDBLite consensus disorder prediction 245 267 - -
Spst4g01750 327 MobiDBLite consensus disorder prediction 298 327 - -
Spst4g01750 327 MobiDBLite consensus disorder prediction 147 161 - -
Spst4g01750 327 SUPERFAMILY RNA-binding domain, RBD 77 245 IPR035979 GO:0003676
Spst4g01750 327 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 171 242 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01750 Spst-Chr4 57516054 57519018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01750 70 245 Eukaryotic Initiation Factors Gene Family AT1G49760 25.128 5.47e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01750 K12893 - gmx:100797778 434.106