Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01747 ATGCCTGGAATTGATATAATAATTTGTGGAAGACTACATGAGCGTCTGCGATCACAGACTATATATGAAATTGAACCAAGAACAGACATAGAACGGCCAGAATTTCATGGTAATGAACCTGAACCTGCTTTCGTTAGTGCGATCCCCACTTTGAGATTCAACCATGAAGCCTTTGTTTCAACTGGAAGCACACAGTGTGTGATATGTTTGGCAGACTACAAAGAAAAAGAATTATTGCGCATCATACCAAAATGTGGCCACACTTTTCACCTTTCTTGCATTGATATGTGGCTGAAAAAACAATCTACTTGTCCAGTGTGTCGTTTGTCACTGAGGCATGTAACATTTACAGTCAGACATTCTCTCGATGTGTCCAATTCTTCAGAGAGGAGCATACACAATGAGAGGCAAGTTGAACCTAGTTCTAGGATCTCTCTACACTCCCAAAGATAG 453 0.4062 MPGIDIIICGRLHERLRSQTIYEIEPRTDIERPEFHGNEPEPAFVSAIPTLRFNHEAFVSTGSTQCVICLADYKEKELLRIIPKCGHTFHLSCIDMWLKKQSTCPVCRLSLRHVTFTVRHSLDVSNSSERSIHNERQVEPSSRISLHSQR 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01747 150 SUPERFAMILY RING/U-box 65 114 - -
Spst4g01747 150 ProSiteProfiles Zinc finger RING-type profile. 66 108 IPR001841 -
Spst4g01747 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 42 116 IPR013083 -
Spst4g01747 150 SMART ring_2 66 107 IPR001841 -
Spst4g01747 150 MobiDBLite consensus disorder prediction 128 150 - -
Spst4g01747 150 CDD RING-H2_EL5-like 65 108 - -
Spst4g01747 150 PANTHER OS11G0150450 PROTEIN 7 141 - -
Spst4g01747 150 Pfam Ring finger domain 65 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01747 Spst-Chr4 57445586 57449886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01747 56 137 C3H Transcription Factor Family AT4G10160 41.111 1.24e-19 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01747 - - gmx:100800505 208.379