Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01734 ATGCAAATGATGTATGAGACAATTTACAAGGCTTTGGTTGAAGTTGGGCTTGAAGCAGCATACTCTCCGCAAGACTACTTGAACTTCTTCTGTCTTGGCAATCGGGAGGCAGTAGATATGTATGAGAATATCACTGGATCTGGATCTGGATCTCTTCCGCCAGCTAATAGTCCCCAAGCAATGAGTAGAAACAGTCGACGTTTTATGATTTATGTCCATTCAAAAGGCATGATAGTTGATGATGAATATGTCATATTGGGGTCTGCAAACATCAACCAGCGTTCTATGGAAGGAACGAGGGACACCGAGATTGCAATGGGTGCCTATCAACCTTATCATACCTGGGCAAGAAGAAAGTTTTATCCACCAGGGCAGATCCATGGATATAGAATGTCACTTTGGGCGGAACATATTGGTGGTATTGAAGACTGCTTTTCACATCCAGAAAGCCTTGAATGTGTTAGGAGGATTAGAACAATAGGTGAAATGAACTGGAAACAATATGCATCAAATGATGCAACAGAAGAGATGAAAGGGCATCTGCTCAAGTACCCGGTAGAAGTCGATCGGAAGGGTATTGTAAGATCCCTTCCTGGCCAGGATGAGTTCCCGGATGTGGGAGGAAAGATTATAGGATCATTTATTGCCATTCAGGAAAATCTAACCATTTGA 672 0.4271 MQMMYETIYKALVEVGLEAAYSPQDYLNFFCLGNREAVDMYENITGSGSGSLPPANSPQAMSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPYHTWARRKFYPPGQIHGYRMSLWAEHIGGIEDCFSHPESLECVRRIRTIGEMNWKQYASNDATEEMKGHLLKYPVEVDRKGIVRSLPGQDEFPDVGGKIIGSFIAIQENLTI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01734 223 PANTHER PHOSPHOLIPASE D 1 213 IPR015679 -
Spst4g01734 223 Pfam Phospholipase D Active site motif 69 95 IPR001736 GO:0003824
Spst4g01734 223 SUPERFAMILY Phospholipase D/nuclease 56 154 - -
Spst4g01734 223 Gene3D Endonuclease Chain A 38 114 - -
Spst4g01734 223 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 68 95 IPR001736 GO:0003824
Spst4g01734 223 Pfam Phospholipase D C terminal 142 213 IPR024632 -
Spst4g01734 223 SMART pld_4 68 95 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01734 Spst-Chr4 57352259 57353621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01734 1 223 Phospholipase D Gene Family (Wang group) AT4G00240 71.300 7.65e-112 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01734 K01115 - gmx:100805294 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01734 4 57352259 57353621 Spst4g01734 4 57352259 57353621 ECH