Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01733 ATGGACAATTACGGGTCTTCACAACATCCATTTGGGTATAATCCTCCATACCCTCCTCCTGATCCATACGCTCGACCACCATATCCATATCCACCAAATCCTCCACATGCCTTCAACTACACATACCCCCCACCTCGTCCACCACACTTCCCTTATTCTACCATAGACCATTCCTTGTACCCTCCTCCTCCTCCTCCAACACCTGGTTCCTTTGAATTTCGTTATTCTCAACCATCCGATACCTATTACCCTCACCAAATTCCTCTAGAATGGAGTGTCGCAGGAGGTGGAGTACCTCAAACTAGTGATAGTTTTGACGCTCCTGTCTGTTCTATTTACCCTCCTTTGGATCATCGCATGAACAATATCAGGCTGTCTGACTCCCCAAGTGCACCTCCAGCATTGACACGTTCCCCTTCAGTCTCAAATTATGAGAATAGAGATGAGTTTTCTGACTCTCCTGGTGATAGTTTTACACCTTCTGTTTGTTCTATTTACCCTCCTTTGGATGATAAAATGAGCTATGCCAGGATGTATGAACCCCCAAGTGCACCTCCATTATTGACACGTTCTCCTTCAGTTTCAAATTATGATAATAGAGATGAGTTTTATGGTCCATCTAGCTACTTCTCCTCAGATTTGGATCAAGGGGACACGCTTGGACTGTCACCTAATTCTGATGACTCAGTGAATAATCAGAGCATGCAGATTGTCCCAGTTCATAACAAAGCGTCTCTGCGAGTTCTGCTCTTGCATGGGAGTTTAGATATTTGGGTCCATACAGCCAAACACCTTCCTAACATGGACATGTTCCATAAGACTTTAGGTGATGTGTTTGGGAGATTGCCTGTCAGTAACAAGGTGGATGGAACAGTGAGCAAGAAGATTACTAGTGATCCTTACGTGTCAATTTCTGTGTCAAATGCTGTAATTGGGAGGACTTTTGTGATTAGCAATAGTGAAAACCCTGTGTGGGAGCAACATTTCTATGTCCCTGTTGCACATCGTGTTGCTGAAGTTAATTTTGTTGTTAAGGACAGTGATGTGGTAGGTTCACAGCGCATTGGTGTTGTGGCAATTCCAGCTGAACAAATATACTCAGGGGAAAGGATACAAGGGACCTACCCTATCCTGAATAGCAATGGAAAGCCTTGTAAGCCTGGTGCTGTCTTGAGTTTATCCATTCAGTACATTCCAATGGAGAAACTTATCACTTATCATCAAGGAGTTGGAGCTGGTCCTGAATATGTCGGGGTTCCTGGCACATATTTTCCTTTGAGGAAAGGTGGAACGGTTACTCTGTATCAAGATGCTCATGTTCCAGATGGTTCTCTACCTACTGTTATGCTTGACCATGGCATGCATTATGCTCATGGAAAGTGTTGGCAAGACATTTGTGATGCCATACGTGGAGCTCAGAGGTTGGTTTACATTACGGGGTGGTCAGTGTGGCACAAAGTTAAGTTGGTAAGGGATGCTGGCAAAGCAACAAATTCCTGCCTGGGTGAACTTCTGAGGGCTAAGTCCTCGGAGGGAGTAAGAGTGCTTCTCCTTGTTTGGGATGACCCTACATCAAGAAGCATTCTTGGTTACAAAATGGATGGTGTAATGGCTACTCATGATGAGGAAACAAGACGATTTTTCAAGCACTCTTCCGTGCAAGTGCTGCTTTGCCCTCGCATTGCTGCAAAACGACATAGCTGGGCCAAACAAAAGGAAGTTGGAACAATATATACACATCATCAGAAAACTGTAATTGTGGACGCTGATGCTGGAAATGGAAAAAGAAAAATTGTAGCATTTGTTGGTGGACTTGATTTGTGTGATGGGCGATATGATAATCCCCACCATCCTCTCTTTAGGACACTGCAGACACTGCATAAGGATGACTATCACAACCCTACTTTCACGGGTAGTACCGGTGGTTGTCCTCGGGAGCCATGGCATGACTTGCATTCCAAAATTGATGGTCCAGCAGCTTATGATGTTTTGACCAACTTTGAGGAGCGCTGGTTAAGAGCTGCAAAACCTAAAGGGTTTAAAAAGTTTACTAGCTCATATGAGGATGCATTGCTTAAGCTAGACAGAATAAAAGATATTATCAGTTCATCTGATGCTCTTGATGTTGATGACTATAATCCTGCATCATGGCATGTTCAGATATTTCGTTCAATTGATTCAAGTTCTGTCAAGGGATTTCCAAAGGAGCCAAAAGATGCATCAAGTATGTTAAACGTTACTGTGTTTATGCAGAATCTAGTATGTGGGAAGAATGTGCTAATTGACATGAGTATACATACAGCATATATACAAGCCATTCGTGCTGCACAACATTATATTTATATAGAGAATCAATATTTCATTGGGTCTTCTTATAATTGGAGTCAACACAGAGACCTTGGTGCTAATAATTTAATTCCGATGGAAATTGCACTGAAGATTGCTGCAAAGATAAGGGCAAATGAGAGATTTGCAGTTTACATTGTTATTCCAATGTGGCCTGAGGGTGTTCCAACAGGTGCTGCCACCCAAAGAATTCTTTTTTGGCAGTCTAGCACCATGCAACCCGAGAGAATAACTCAGGAGATCTCATTGTCCAAGTAA 2604 0.4293 MDNYGSSQHPFGYNPPYPPPDPYARPPYPYPPNPPHAFNYTYPPPRPPHFPYSTIDHSLYPPPPPPTPGSFEFRYSQPSDTYYPHQIPLEWSVAGGGVPQTSDSFDAPVCSIYPPLDHRMNNIRLSDSPSAPPALTRSPSVSNYENRDEFSDSPGDSFTPSVCSIYPPLDDKMSYARMYEPPSAPPLLTRSPSVSNYDNRDEFYGPSSYFSSDLDQGDTLGLSPNSDDSVNNQSMQIVPVHNKASLRVLLLHGSLDIWVHTAKHLPNMDMFHKTLGDVFGRLPVSNKVDGTVSKKITSDPYVSISVSNAVIGRTFVISNSENPVWEQHFYVPVAHRVAEVNFVVKDSDVVGSQRIGVVAIPAEQIYSGERIQGTYPILNSNGKPCKPGAVLSLSIQYIPMEKLITYHQGVGAGPEYVGVPGTYFPLRKGGTVTLYQDAHVPDGSLPTVMLDHGMHYAHGKCWQDICDAIRGAQRLVYITGWSVWHKVKLVRDAGKATNSCLGELLRAKSSEGVRVLLLVWDDPTSRSILGYKMDGVMATHDEETRRFFKHSSVQVLLCPRIAAKRHSWAKQKEVGTIYTHHQKTVIVDADAGNGKRKIVAFVGGLDLCDGRYDNPHHPLFRTLQTLHKDDYHNPTFTGSTGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRAAKPKGFKKFTSSYEDALLKLDRIKDIISSSDALDVDDYNPASWHVQIFRSIDSSSVKGFPKEPKDASSMLNVTVFMQNLVCGKNVLIDMSIHTAYIQAIRAAQHYIYIENQYFIGSSYNWSQHRDLGANNLIPMEIALKIAAKIRANERFAVYIVIPMWPEGVPTGAATQRILFWQSSTMQPERITQEISLSK 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01733 867 FunFam Phospholipase D delta 248 393 - -
Spst4g01733 867 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 251 399 IPR035892 -
Spst4g01733 867 Pfam C2 domain 253 377 IPR000008 -
Spst4g01733 867 MobiDBLite consensus disorder prediction 123 157 - -
Spst4g01733 867 MobiDBLite consensus disorder prediction 12 30 - -
Spst4g01733 867 MobiDBLite consensus disorder prediction 121 157 - -
Spst4g01733 867 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 576 611 IPR001736 GO:0003824
Spst4g01733 867 ProSiteProfiles C2 domain profile. 234 375 IPR000008 -
Spst4g01733 867 FunFam Phospholipase D delta 452 690 - -
Spst4g01733 867 Gene3D Endonuclease Chain A 718 858 - -
Spst4g01733 867 SUPERFAMILY Phospholipase D/nuclease 461 676 - -
Spst4g01733 867 Pfam Phospholipase D Active site motif 577 611 IPR001736 GO:0003824
Spst4g01733 867 Gene3D Endonuclease Chain A 452 695 - -
Spst4g01733 867 SUPERFAMILY Phospholipase D/nuclease 765 847 - -
Spst4g01733 867 CDD C2_plant_PLD 248 398 - -
Spst4g01733 867 Gene3D C2 domain 248 385 IPR035892 -
Spst4g01733 867 SMART C2_3c 254 374 IPR000008 -
Spst4g01733 867 MobiDBLite consensus disorder prediction 1 30 - -
Spst4g01733 867 PANTHER PHOSPHOLIPASE D 243 856 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01733 Spst-Chr4 57344725 57351650 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01733 27 855 Phospholipase D Gene Family (Wang group) AT2G42010 64.183 0.0 1039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01733 K01115 - gmx:100805294 1223.76