Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01726 ACAGGGCAAAGGTTTGGATTTGGTTCACACATTTGTTTTAGGTTTCACCTTCCTAATGGACTCAAGCTTGACATTCTTTTTTGTGTTCACACGTATGCTACACACATGGATAAAAGGCTTCTGTGTCTTCAAGTCTTACTTGGAGGGCTCAGATTTGCTGCAAATCTCTCCATTTCCTCATCATCAGAAGGTTTAATTTCTTGGCTTGCTCTCTACCTACTTGTTTCGTATGTATTTTCGGGTACTAATGATTCGAGTGAGCAGAAAGAAGAAGAGATGGTGAGAGGAAAGACCCAGATGAAGCGTATAGAGAACGCCACAAGCCGGCAAGTAACTTTCTCAAAGCGGCGAAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTGTGTGATGCTGAGGTTGCTCTTATAATCTTCTCTCCAAGAGGGAAGCTCTATGAATTTGCTAGCTCCAGGTACTCACCATTCTTCTCCTCCTTCAACTTTCCCTTTCCTTCTTCTTCTTCTTCTTCTTTAATTAATTGTCTGATTGCTTCTGCTTCCTGTAATTTTAGCACCCCCTCATGA 570 0.4211 TGQRFGFGSHICFRFHLPNGLKLDILFCVHTYATHMDKRLLCLQVLLGGLRFAANLSISSSSEGLISWLALYLLVSYVFSGTNDSSEQKEEEMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSRYSPFFSSFNFPFPSSSSSSLINCLIASASCNFSTPS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01726 189 Gene3D - 105 177 IPR036879 GO:0003677|GO:0046983
Spst4g01726 189 ProSiteProfiles MADS-box domain profile. 93 153 IPR002100 GO:0003677|GO:0046983
Spst4g01726 189 SUPERFAMILY SRF-like 93 162 IPR036879 GO:0003677|GO:0046983
Spst4g01726 189 PRINTS MADS domain signature 115 130 IPR002100 GO:0003677|GO:0046983
Spst4g01726 189 PRINTS MADS domain signature 130 151 IPR002100 GO:0003677|GO:0046983
Spst4g01726 189 PRINTS MADS domain signature 95 115 IPR002100 GO:0003677|GO:0046983
Spst4g01726 189 CDD MADS_MEF2_like 95 152 IPR033896 GO:0000977|GO:0045944
Spst4g01726 189 Coils Coil 86 106 - -
Spst4g01726 189 SMART madsneu2 93 152 IPR002100 GO:0003677|GO:0046983
Spst4g01726 189 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 102 149 IPR002100 GO:0003677|GO:0046983
Spst4g01726 189 PANTHER SERUM RESPONSE FACTOR HOMOLOG 95 153 - -
Spst4g01726 189 ProSitePatterns MADS-box domain signature. 95 149 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01726 Spst-Chr4 57225028 57230557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01726 93 161 MADS-box Gene Family AT2G45660 84.058 2.55e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst4g01726 SRF-TF 6.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01726 - - egu:105043288 115.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01726 4 57225028 57230557 Spst4g01726 4 57225028 57230557 ECH
Spst4g01726 4 57225028 57230557 Spst4g01724 4 57197094 57206822 ECH