Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01724 ATGGGGGCGTGGAAGGCACTGGCGCGTGAGAGTGGAACTTCCCTTTCACTTGCCCTAAACTGCAGCAAAATTAAAACTATGCAGCAAGAGAGAGCAGGGAGAAAAAGAGAGAGAGAGAGAATGGGTCGAGGGAGGGTTGAGCTGAAGAGGATAGAGAACAAAATCAACCGCCAAGTTACTTTCTCAAAAAGAAGGAACGGTTTGCTCAAGAAAGCCTATGAGCTCTCAGTTCTCTGCGATGCTGAGGTTGCCCTCATCATTTTCTCAAGCCGTGGGAAGCTCTATGAATTTGGAAATGTTGGGAACTTTCAGGGCATGGATTATAGGGGGAAAATATCAGGAGTTTTGCTTCGTTCCAATTACAGATCGACACGTTTTATCGTCCTTCCACCTGATATCTCTCTATTCATTACCAAGACTATTGAGCGATACCAACGTTGCTCGTTTACTCCTCAAGATGAACACGTTGAATGTGAAACTCAGAGCTGGTACCAGGAGGTGTCAAAACTAAAGGCAAAGTACGAGTCTCTTCAAAGGACCCAGAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAACATAAAAGAGCTACAGAGTCTTGAGAAACAGCTTGAAGCAGCATTAGCACAAGCTAGGCAAAGGAAGGTTGTAAAAACACAAATCATGATTGAACAAATGGAAGAGCTTCGCAGAAGGGAGCGCCATCTTGGAGATATGAACAAGCAACTTAGACTCAAGCTTGAATCAGAGGGATTTAATCTTAAAGCTATGGAAAGCTTGTGGAGCTCTAATTCAGCTGCTGGAAATAGTGCCTTTCCCTTTCAGCCTGCTCAAACCAACCCTTTGGATTACCAGGCTGAACCCTTTTTGCAAATAGGTAAAATGAGGAGATGTGAAGAAAGAGTGGTAGTATCTTAA 918 0.4412 MGAWKALARESGTSLSLALNCSKIKTMQQERAGRKRERERMGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNVGNFQGMDYRGKISGVLLRSNYRSTRFIVLPPDISLFITKTIERYQRCSFTPQDEHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLNIKELQSLEKQLEAALAQARQRKVVKTQIMIEQMEELRRRERHLGDMNKQLRLKLESEGFNLKAMESLWSSNSAAGNSAFPFQPAQTNPLDYQAEPFLQIGKMRRCEERVVVS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01724 305 PRINTS MADS domain signature 78 99 IPR002100 GO:0003677|GO:0046983
Spst4g01724 305 PRINTS MADS domain signature 43 63 IPR002100 GO:0003677|GO:0046983
Spst4g01724 305 PRINTS MADS domain signature 63 78 IPR002100 GO:0003677|GO:0046983
Spst4g01724 305 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 241 - -
Spst4g01724 305 SUPERFAMILY SRF-like 42 106 IPR036879 GO:0003677|GO:0046983
Spst4g01724 305 Coils Coil 226 246 - -
Spst4g01724 305 CDD MADS_MEF2_like 46 117 IPR033896 GO:0000977|GO:0045944
Spst4g01724 305 Pfam K-box region 159 247 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst4g01724 305 ProSiteProfiles K-box domain profile. 160 253 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst4g01724 305 ProSitePatterns MADS-box domain signature. 43 97 IPR002100 GO:0003677|GO:0046983
Spst4g01724 305 SMART madsneu2 41 100 IPR002100 GO:0003677|GO:0046983
Spst4g01724 305 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 50 97 IPR002100 GO:0003677|GO:0046983
Spst4g01724 305 Coils Coil 194 217 - -
Spst4g01724 305 Gene3D - 53 111 IPR036879 GO:0003677|GO:0046983
Spst4g01724 305 ProSiteProfiles MADS-box domain profile. 41 101 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01724 Spst-Chr4 57197094 57206822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01724 41 293 MADS-box Gene Family AT2G45650 57.529 2.57e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst4g01724 K-box 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01724 K09264 - gmx:100820061 342.428
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01724 4 57197094 57206822 Spst4g01724 4 57197094 57206822 ECH
Spst4g01726 4 57225028 57230557 Spst4g01724 4 57197094 57206822 ECH
Spst10g01038 10 11104609 11123548 Spst4g01724 4 57197094 57206822 PCT