Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01704 ATGGATCAAGTAAACAAAGAAAAGGAGGCTAGGTGCTCCAAAGTTGTTGATTCTGATATTTTGGATCCTATAAACCAGAAGGATCTACAGGAGGTTCGGGAGACCATTGAGGGGGCTGGAGACAAGGATATGGATTTTACTTCCAACAAGATGGTCATAACTGACATAGAACATTTGATGGGAATAGAGGACATTTCTACCCAAGCAAATGGTTTTGATAAGGAGCAGAAGCTCATAAATGAGTTTGAGCTAGTTATGAAAGGAACTGAAGATCTTATTTGTGATAATGGTTTAAACCCCTTGAACATGGGATTTGATGATAAACATAATGATGGCTGTGAAGTTGGGTTGATGGATTCTCTGCTAGACATGGAAGAGGGAGAAATTTCTCGGGACTTGGGAATGGATGGCAATTCATTAGACGTGTCTTCTGCAGATGCTTTAATTTTGCAGCAGATGAAAGTAGGTGAGGTTCAGAAGCCTGTAAGTGTAACTAGGAATATGATATATCCTTATATGATTAAGAATCAAGAAAAGGAAAAAGGCCATGAGTCTACTTCCTCTATGGTAAATTCACTTCAAGATACCAATGATAGTGGACAAGTGGAGCCTAGAACTGGTAGCAACAAGGGGATTGCATACACAATTTCTGAAGAAACTCTTGAATGTAAGAAGGGAGATAAAACGAAGTTGGTAAATGCCAGCATAAGGGACAAACGTGGTGGAAAGAAAGCAAAAAAGAAGAAGGCGTATAGAATGAAAAGAGCAGAAAAGATAAGAGAACTAGGTGTTAAAAGATTGCAGTTGCAGCCATATATACAAAAACCAAAAGTTGTGTCACATTGTCGCCATTATCTTGTGGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTTTCACATGATGCAGTGCCTCGAACAAAATCCAAGCCATGTAGTCACTTTGCAAATCGCTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTCTCAAAATATCCTTGTAACAATTTTGTATCCCAAGGTTCTTGTAGAAGAGGTGAAGTTTGCTTGTTTTCACACCAGGTACCAACCAAAGAAGATATCCCTACCTCTTCAAATATGCTCAGACCAGAGTTGTCTACTCTTAAGTCAGGAAATGCAAATTTCAGTACACCGCTTAACAATAATCACAGCTCTGGTTCTGTCCAGCAAAACCACTTTACTCATTCTTCTGGAATGCATCCTCGCACCAATGTTGAACATAAGGTGATAAACACTGCACAGAAACAACCTACACCACCTAAAGGAATTAGTTTCATCAATCTTGCAAAAGTAACACCCAGCCTTTCTATACTAAAACAAGGCACAGTAACAATCAAGGGAAGTCCTTTACAAACTGGGGCCCACGAAGATCAAAGTGCATTTAATAAAACCCAAAACAAGGTGGAGATTCCTAAGAAATTGCCAGCTGTGACACCCAAGGGAGTAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTGCGGCTTTAAAAGTCATATTCGCCCCAATTTGAGTACCAAAAATGGTTGCAAGTTGCCTCAGTTACTCAATTTTGGTTTGCCTGAGCAGGCAAATTCCTCTCTAAGTAAGGATGGCTACAACAAAGCTAGTGACAGAACAAAACAAAGTGTATCACTGACTGATATATTCTTAACTGAGATTTTAGGAAAAAATCAACCCGTGTCAGAAGGAATGAAATCAAAGTTTCCAGATAAAACCTCAGCTACACTGAGTCCTTTTGTTTCAAACCAGTCTTCTGAACACCTAAAATCTGGTTATCATAAGCATGTATCAAACTCTGGTCAAAAGGCACTCTTGTCAACATTAGCATTTGCAGCAGAGCATGAATCTGACATTAAGATGAAATACCCAAACATTGATTCGTTAGCATGA 1917 0.3959 MDQVNKEKEARCSKVVDSDILDPINQKDLQEVRETIEGAGDKDMDFTSNKMVITDIEHLMGIEDISTQANGFDKEQKLINEFELVMKGTEDLICDNGLNPLNMGFDDKHNDGCEVGLMDSLLDMEEGEISRDLGMDGNSLDVSSADALILQQMKVGEVQKPVSVTRNMIYPYMIKNQEKEKGHESTSSMVNSLQDTNDSGQVEPRTGSNKGIAYTISEETLECKKGDKTKLVNASIRDKRGGKKAKKKKAYRMKRAEKIRELGVKRLQLQPYIQKPKVVSHCRHYLVGRCHEGDKCQFSHDAVPRTKSKPCSHFANRSCMKGDDCPFDHQLSKYPCNNFVSQGSCRRGEVCLFSHQVPTKEDIPTSSNMLRPELSTLKSGNANFSTPLNNNHSSGSVQQNHFTHSSGMHPRTNVEHKVINTAQKQPTPPKGISFINLAKVTPSLSILKQGTVTIKGSPLQTGAHEDQSAFNKTQNKVEIPKKLPAVTPKGVNFLSFGKGSVCGFKSHIRPNLSTKNGCKLPQLLNFGLPEQANSSLSKDGYNKASDRTKQSVSLTDIFLTEILGKNQPVSEGMKSKFPDKTSATLSPFVSNQSSEHLKSGYHKHVSNSGQKALLSTLAFAAEHESDIKMKYPNIDSLA 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01704 638 ProSiteProfiles Zinc finger C3H1-type profile. 305 332 IPR000571 GO:0046872
Spst4g01704 638 Gene3D - 228 305 - -
Spst4g01704 638 ProSiteProfiles Zinc finger C3H1-type profile. 335 358 IPR000571 GO:0046872
Spst4g01704 638 ProSiteProfiles Zinc finger C3H1-type profile. 276 303 IPR000571 GO:0046872
Spst4g01704 638 SUPERFAMILY CCCH zinc finger 334 364 IPR036855 GO:0046872
Spst4g01704 638 MobiDBLite consensus disorder prediction 179 208 - -
Spst4g01704 638 MobiDBLite consensus disorder prediction 186 208 - -
Spst4g01704 638 Pfam CCCH-type zinc finger 281 301 IPR041367 -
Spst4g01704 638 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 122 631 IPR045124 GO:0003723|GO:0045892
Spst4g01704 638 SUPERFAMILY CCCH zinc finger 277 301 IPR036855 GO:0046872
Spst4g01704 638 Gene3D - 306 369 - -
Spst4g01704 638 Pfam RNA-binding, Nab2-type zinc finger 310 329 - -
Spst4g01704 638 Pfam RNA-binding, Nab2-type zinc finger 335 355 - -
Spst4g01704 638 SMART c3hfinal6 305 331 IPR000571 GO:0046872
Spst4g01704 638 SMART c3hfinal6 275 302 IPR000571 GO:0046872
Spst4g01704 638 SMART c3hfinal6 333 357 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01704 Spst-Chr4 56947051 56950384 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst4g01704 zf-CCCH_4 1.2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01704 - - vun:114165961 914.064