Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01686 ATGGATCCTGTAGCAGCACAAGGACGTCCTCTTCCTCCCCCTTTTCTCACCAGAGATCTTCACTTACATCCTCACCACCAATTTCAGCCCCACCACAACCACCAAAACACCGAGGATGAGGCCGCCAATGGCCGCGGCCATAAGCGAGATCGCGACGAGAACGCCGGCAGCGGCGGAGGTGGGGTCACCACACCCCCGCACGCCGGCGGAGAAGGCAAGGAACCCGGGTCAGGAGATGGAGGAGGAAGTGAAATGGCGAGAAGGCCAAGAGGAAGACCCGCAGGGTCCAAAAACAAGCCCAAACCACCCATTATCATCACAAGGGACAGTGCCAACGCTCTCCGATCCCATGTTATGGAAATCGCCAACGGCTGCGACATCATGGAGAGCGTCACCGCCTTCGCGAGACGGCGACAGCGTGGTGTCTGTGTGCTCAGCGGCAGCGGCACCGTCACCAACGTCACCCTCCGGCAGCCAGCTTCACCGGGTGCCGTTGTGACCCTTCATGGAAGGTTCGAGATTCTGTCGCTCTCTGGTTCATTCCTTCCGCCGCCGGCTCCTCCAGCGGCGTCAGGACTAGCCATATACTTAGCCGGCGGACAGGGACAGGTAGTAGGTGGAAGCGTGGTGGGTCCCCTTGTGGCCTCAGGTCCTGTTGTAATCATGGCTGCTTCATTTGGTAATGCTGCCTATGAGAGACTACCCTTAGAAGAAGAGGAAACTCCGGTACCAGTTCCTGGCACTGGAGGATTAGGGTCCCCTGGAATTGCAGGGAACCAGCAACAATCGCAATCGCAGCCTCAACAGCCACAACAGCTTGTGGGAGATCCTAATACTTCTTCTCTCTTCCATGGAGTCCCTCAAAATCTTCTCAATTCGGTTCAATTACCGGCTGAGGGTTATTGGGGTGGCAGTGCTCGTCCCCCCTTTTAA 933 0.5723 MDPVAAQGRPLPPPFLTRDLHLHPHHQFQPHHNHQNTEDEAANGRGHKRDRDENAGSGGGGVTTPPHAGGEGKEPGSGDGGGSEMARRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMESVTAFARRRQRGVCVLSGSGTVTNVTLRQPASPGAVVTLHGRFEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPVPVPGTGGLGSPGIAGNQQQSQSQPQQPQQLVGDPNTSSLFHGVPQNLLNSVQLPAEGYWGGSARPPF 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01686 310 MobiDBLite consensus disorder prediction 19 55 - -
Spst4g01686 310 Pfam Plants and Prokaryotes Conserved (PCC) domain 115 227 IPR005175 -
Spst4g01686 310 MobiDBLite consensus disorder prediction 254 286 - -
Spst4g01686 310 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 277 IPR014476 GO:0003680
Spst4g01686 310 ProSiteProfiles PPC domain profile profile. 111 247 IPR005175 -
Spst4g01686 310 PIRSF ESCAROLA 16 310 IPR014476 GO:0003680
Spst4g01686 310 FunFam AT-hook motif nuclear-localized protein 114 241 - -
Spst4g01686 310 MobiDBLite consensus disorder prediction 239 286 - -
Spst4g01686 310 Gene3D - 114 243 - -
Spst4g01686 310 SUPERFAMILY AF0104/ALDC/Ptd012-like 111 246 - -
Spst4g01686 310 MobiDBLite consensus disorder prediction 1 105 - -
Spst4g01686 310 CDD DUF296 115 226 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g01686 Spst-Chr4 56593239 56594171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01686 1 310 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 65.749 1.06e-90 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01686 - - gmx:100816243 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g01686 4 56593239 56594171 Spst4g01686 4 56593239 56594171 ECH