Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g01680 ATGGAAGATTCTGATCAACCTGCCAACTCTGCTGAAAACCAGCAAACTGAACAGGTTTGTAGTTTTTTCAGAAAACCGATAAATAAAAAGAATATAAGGAAACGGACTATTGACGATGAAGATAATGTGGAGGACTCAAACAAAGAAACTTCTCTGTTGCATATTCAAAAGAAGACCTTAAAACCTGACAATAAGTTGTACTTTTTCACTGGCTCTTCAAAAAGCTCTGTATCTGCTGAATCAACAGAAGAGTCTGGAAAACCAGTCTTTCAGTTTGAGTCTTCAAAAGATATTCAAGTTCAACATGATAGCAAAGCAACGGCAACTCTAGAGACTGAGACTGAGTTTTCAAAAGATGCTCGTGCCATCCGTGAAAGAGCACTCAAGCAAGCATCAGAGAGTCTGAAAGGGAAAAGTGCAAGGTCTGAGGATGAAAAATTATATAAGGGAATTAACAGTTATAAAGACTACAAAGCTGGCTTTCGTCGAGAACAAACAATTGCTAGTGAAAAAGCTGGTGGGGCACATGGTCCGCTTAGGGCTTCAGCTCATATAAGAGTTTCAGCAAGGTTTGATTATCAACCTGACATATGTAAGGATTATAAGGAAACTGGTTACTGTGGATATGGTGATTCATGTAAGTTTATGCATGATCGAGGGGATTACAAATCTGGGTGGCAGTTGGAGAAGGAATGGGAAGAAGCTGAGAAAGCTAGGAAGATGAGATTGGCCGCCGGTGAGGATGCGGGTGAGGAAGAGGGTGCTAACTTGATTGATGAAGATGACGAAGACGAAGACTCGTTACCTTTTGCATGTTTCATCTGTAGAAACCCTTTTTTGGATCCTGTTGTTACCAAGTGCAAGCACTACTTCTGCGAGCATTGTGCATTGAAGCATCATGGAAAGAATAAGAAATGTTTTGTCTGCAACCAGCCAACACTTGGCATTTTTAATGTTGCTCATGAGATACGCAGGAAGATGACCGAGAATAAATAA 996 0.4046 MEDSDQPANSAENQQTEQVCSFFRKPINKKNIRKRTIDDEDNVEDSNKETSLLHIQKKTLKPDNKLYFFTGSSKSSVSAESTEESGKPVFQFESSKDIQVQHDSKATATLETETEFSKDARAIRERALKQASESLKGKSARSEDEKLYKGINSYKDYKAGFRREQTIASEKAGGAHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWEEAEKARKMRLAAGEDAGEEEGANLIDEDDEDEDSLPFACFICRNPFLDPVVTKCKHYFCEHCALKHHGKNKKCFVCNQPTLGIFNVAHEIRRKMTENK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g01680 331 MobiDBLite consensus disorder prediction 32 50 - -
Spst4g01680 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Spst4g01680 331 Gene3D - 190 224 - -
Spst4g01680 331 MobiDBLite consensus disorder prediction 7 22 - -
Spst4g01680 331 ProSitePatterns Zinc finger RING-type signature. 287 296 IPR017907 -
Spst4g01680 331 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Spst4g01680 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 329 IPR013083 -
Spst4g01680 331 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Spst4g01680 331 FunFam Zinc finger CCCH domain-containing protein 1 190 224 - -
Spst4g01680 331 CDD RING-HC_RNF113A_B 268 318 - -
Spst4g01680 331 PANTHER ZINC FINGER PROTEIN 183 1 331 IPR039971 -
Spst4g01680 331 SUPERFAMILY RING/U-box 271 314 - -
Spst4g01680 331 MobiDBLite consensus disorder prediction 31 50 - -
Spst4g01680 331 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Spst4g01680 331 SMART ring_2 272 309 IPR001841 -
Spst4g01680 331 MobiDBLite consensus disorder prediction 1 23 - -
Spst4g01680 331 ProSiteProfiles Zinc finger RING-type profile. 272 310 IPR001841 -
Spst4g01680 331 FunFam RING finger protein 113A 270 329 - -
Spst4g01680 331 Pfam Zinc finger, C3HC4 type (RING finger) 271 313 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g01680 7 331 C2H2 Transcription Factor Family AT1G01350 68.308 1.11e-163 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst4g01680 zf-C3HC4_3 5e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g01680 K13127 - gmx:100817146 579.711